Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10530 728 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 58 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 57 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 57 / 3e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 57 / 3e-08 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G13480 56 / 4e-08 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 50 / 2e-06 TAF5 TBP-associated factor 5 (.1) AT2G41500 50 / 3e-06 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT3G21540 50 / 4e-06 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 49 / 4e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029100 [exp] 900 / 0 AT3G10530 732 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 58 / 1e-08 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 55 / 1e-07 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 54 / 2e-07 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 53 / 5e-07 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.007G009500 [exp] 52 / 7e-07 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 50 / 1e-06 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G147400 [exp] 50 / 2e-06 AT3G13340 605 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G020200 [exp] 50 / 3e-06 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037324 [exp] 744 / 0 AT3G10530 718 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024656 [exp] 544 / 0 AT3G10530 483 / 1e-169 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035740 [exp] 479 / 2e-166 AT3G10530 431 / 2e-147 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032289 [exp] 453 / 9e-156 AT3G10530 443 / 4e-152 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035742 [exp] 160 / 2e-46 AT3G10530 214 / 2e-67 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 56 / 9e-08 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10018458 [exp] 55 / 1e-07 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 55 / 1e-07 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 55 / 2e-07 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041007 [exp] 54 / 2e-07 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08149 [poplar] [flax] BING4CT BING4CT (NUC141) domain
Representative CDS sequence Show only first row Show all	>Potri.010G232500.1 pacid=42798771 polypeptide=Potri.010G232500.1.p locus=Potri.010G232500 ID=Potri.010G232500.1.v4.1 annot-version=v4.1 ATGGGTGCGAAACAAGAAAATGGTGACCCTGAGGATATTTTGCCTCCTCCTGAACAAGAATTATCTCACGAGTTGGATATGAAAGTAAAGAAGTATCTTA GAGGAGAAGGAGCTGATTTGGAGGTTTTAAAAGACAAAAAGCTCAAGGGTCAACTTTATGATAGAGAAAATTTATATGGAAAATCTGCAAAAGCTGCAGC CAAGACTGAAAAGTGGCTTTTGCCAAGTGAGGGAGGCTATCTCGAGGCTGAGGGTATAGAGAAGACATGGAGGATCAAACAGGACACAATCGGCCGTGAA GTTGATATCTCAAGCGCAAAGAATCAATATGATATAGTCTTGCCAGATTTTGGTCCATACACTCTGGATTTTACTTCAAGTGGTCGATACATGGCAGCTG CTGGTCGCAAGGGGCACTTGGCTGTTGTTGACATGAAGAATATGAGCTTAATTAAAGAGATGCAGGTTAGAGAAACAGTGCGTGATGTTGTGTTTTTGCA CAATGAGCTGTTCTTTGCTGCTGCCCAGAAAAAGTACCCATACATTTATAACAGAGATGGTGTCGAACTTCATTGTTTAAAGGAACATGGTGCAGTGACA AGGCTTCAGTTTCTGAAAAACCACTTTCTCTTGGCGTCAATAAACAAATTTGGGCAGCTGCGATACCAAGATGTTACAATGGGTGAGATGATAAGCAATT TCCGGACAGGTTTAGGCCGTACTGATGTGATGCAGGCCAATCCTTTCAATGGGGTTGTTGCTTTGGGTCATTCAGGTGGTACAGTAAGCATGTGGAAGCC CACTAGTGCGGTTCCCCTTGTCAAGATGCTGTGTCATCCTGGGCCTATCACAGCAATGGCATTTCATCCTGATGGCCATCTCATGGCCACGTCTGGCAAG GAAAAGAAAATTAAGATTTGGGACGTGAGGAAATTTGAGGTTCTCCAAACTATAAGAGGCCATGCAAAAACCTTGGACTTCAGTCAAAAAGGTTTACTAG CTGCTGGAACTGGATCGTTTGTTCAGGTTTTTGGAGATTTCTCTGGATCACGGAATTACAGCAGACATATGGGTCATTCTATTGTGAAAGGTTATCAGAT AGGGAAAGTTGCATTTCGACCATACGAAGATGTTCTAGGCATAGGGCACTCCACGGGATGGTCTTCAATTCTTATCCCAGGTTCAGGGGAACCCAACTTT GACACATGGTTAGCAAACCCATTTGAAACTACTAAACAACGAAGAGAGAAGGAAATTCACTCTCTTCTCGACAAGCTCCCCCCCGAGACAATTATGCTGG ACCCTTCAAAGATTGGTACAGTGAAGTCAGCAAAGAAGAAAGAGAAACCAACAAAGAAGGAGATGGAGGCGGATATGGAAGCTGCTGTTGAAGCAGCCAA GGGAACTGCCATTAAGAACAAAACAAAGGGGAAGAATAAGCCAAGTAAAATAGCAGTAAAGAAAAAGGAGATTGTTGTAAGGGCCAAGAAACCTTTCTTG GACCAACAAATGAAAGAGGAAGAAAACGTGGCTAAAAAGAAGCAGAAAATCAGCGAGGAAATTTCGTTACCTACGGCTTTGCAAAGATTTGCCCGTAAGA AAGCAACGGCATAA
AA sequence Show only first row Show all	>Potri.010G232500.1 pacid=42798771 polypeptide=Potri.010G232500.1.p locus=Potri.010G232500 ID=Potri.010G232500.1.v4.1 annot-version=v4.1 MGAKQENGDPEDILPPPEQELSHELDMKVKKYLRGEGADLEVLKDKKLKGQLYDRENLYGKSAKAAAKTEKWLLPSEGGYLEAEGIEKTWRIKQDTIGRE VDISSAKNQYDIVLPDFGPYTLDFTSSGRYMAAAGRKGHLAVVDMKNMSLIKEMQVRETVRDVVFLHNELFFAAAQKKYPYIYNRDGVELHCLKEHGAVT RLQFLKNHFLLASINKFGQLRYQDVTMGEMISNFRTGLGRTDVMQANPFNGVVALGHSGGTVSMWKPTSAVPLVKMLCHPGPITAMAFHPDGHLMATSGK EKKIKIWDVRKFEVLQTIRGHAKTLDFSQKGLLAAGTGSFVQVFGDFSGSRNYSRHMGHSIVKGYQIGKVAFRPYEDVLGIGHSTGWSSILIPGSGEPNF DTWLANPFETTKQRREKEIHSLLDKLPPETIMLDPSKIGTVKSAKKKEKPTKKEMEADMEAAVEAAKGTAIKNKTKGKNKPSKIAVKKKEIVVRAKKPFL DQQMKEEENVAKKKQKISEEISLPTALQRFARKKATA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10530			Transducin/WD40 repeat-like su...		Potri.010G232500 [exp]	0	1
AT4G34910			P-loop containing nucleoside t...		Potri.007G021800 [exp]	1.00	0.9088
AT1G23280			MAK16 protein-related (.1)		Potri.015G083700 [exp]	2.44	0.8118
AT3G13230			RNA-binding KH domain-containi...		Potri.001G469200 [exp]	3.46	0.8285
AT3G02220			unknown protein		Potri.004G116800 [exp]	3.74	0.7850
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.003G075900 [exp]	4.24	0.8316
AT5G52380			VASCULAR-RELATED NAC-DOMAIN 6 ...		Potri.015G144600 [exp]	5.29	0.8091
AT1G20370			Pseudouridine synthase family ...		Potri.005G247000 [exp]	6.32	0.8212
AT1G80750			Ribosomal protein L30/L7 famil...		Potri.001G047400 [exp]	9.38	0.8234
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.015G001900 [exp]	10.00	0.7655
AT3G07870			F-box and associated interacti...		Potri.011G137200 [exp]	10.95	0.7809

Compare expression of checked genes

Potri.010G232500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.