Plant FIBer expression Database

Potri.010G232600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G04490 320 / 2e-109 VTE5 vitamin E pathway gene 5 (.1)
AT5G58560 195 / 2e-60 FOLK farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G279900
[exp]
195 / 2e-61 AT5G58560 333 / 8e-116 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1)
Potri.009G074800
[exp]
193 / 7e-60 AT5G58560 354 / 8e-123 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1)
Potri.009G074700
[exp]
181 / 5e-56 AT5G58560 332 / 3e-115 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1)
Potri.008G029000
[exp]
153 / 4e-46 AT5G04490 117 / 7e-33 vitamin E pathway gene 5 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017447
[exp]
348 / 2e-120 AT5G04490 330 / 3e-113 vitamin E pathway gene 5 (.1)
Lus10028835
[exp]
299 / 5e-101 AT5G04490 280 / 1e-93 vitamin E pathway gene 5 (.1)
Lus10031858
[exp]
186 / 1e-57 AT5G58560 341 / 1e-118 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1)
Lus10031288
[exp]
170 / 1e-50 AT5G58560 321 / 1e-109 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1)
PFAM info
Representative CDS sequence
>Potri.010G232600.2 pacid=42799705 polypeptide=Potri.010G232600.2.p locus=Potri.010G232600 ID=Potri.010G232600.2.v4.1 annot-version=v4.1
ATGGCCCTCTCGTCTTGCACTCTTACCCTCTCTCACTCTTCTTTACGCCGCCACGTACACAAATACACCACCACTATCCACCTCGCCCCTCCTCCGTCTC
CTCCTCCTCACTGGAACTTGCCCAATCCACCAGTACTTCCTTTCCGACGTCTCGTTTCCTTTCCTCCTTACATTCCTTGCTCCTCCCTCATTTCCGCCAC
CGCACCTCTACTTCAAGACGCCGGTGCCACGGCTACTGTACTTGCTGGTGCTTACAGTCTCGTTCGCACTTTTGATACTCTCACTCAGCGAAATCTCATT
CAACAGAGTTTGAGCAGAAAACTAGTTCATATACTTTCGGGCTTGCTTTTTGCTGCTTGCTGGCCTATTTTCAGCACCTCAACACAGGCTCGCTACTTAG
CTTCTGTAGTACCTCTTGTGAATTGCTTAAGGCTTATTGTAAATGGCTTCTCTTTGGTTACTGATGAAGGGCTCATTAAATCTGTTACTCGAGAAGGAAA
TCCGCAGGAGTTGCTGAGAGGACCTTTGTATTATGTTTTGATATTGATTTTGTGTGCTCTTGTTTTTTGGCGTGAGTCTCCAACTGGGGTGATCTCTTTG
GCCATGATGTGTGGTGGGGATGGTGTGGCTGATATAATCGGTAGAAGATTTGGGTCATTGAAGCTTCCTTACAATCAACACAAGAGCTGGGCTGGTAGCA
TATCTATGTTCATCTGTGGCTTCTTGATTTCTATTGGGATGCTGTTCTACTATTCAGCCCTCGGATATTTCCAGTTGGATTGGACATGGACAATTCAGAG
AGTGGCTTTAGTGGCTTTAGTGGCAACTGTTGTAGAGTCCCTTCCAATTACAGAGGTAGTAGATGACAACATAACTGTTCCTTTAGTAAGCATGGTGGTA
TCAATGCTAAGCTTCGGTTACTAG
AA sequence
>Potri.010G232600.2 pacid=42799705 polypeptide=Potri.010G232600.2.p locus=Potri.010G232600 ID=Potri.010G232600.2.v4.1 annot-version=v4.1
MALSSCTLTLSHSSLRRHVHKYTTTIHLAPPPSPPPHWNLPNPPVLPFRRLVSFPPYIPCSSLISATAPLLQDAGATATVLAGAYSLVRTFDTLTQRNLI
QQSLSRKLVHILSGLLFAACWPIFSTSTQARYLASVVPLVNCLRLIVNGFSLVTDEGLIKSVTREGNPQELLRGPLYYVLILILCALVFWRESPTGVISL
AMMCGGDGVADIIGRRFGSLKLPYNQHKSWAGSISMFICGFLISIGMLFYYSALGYFQLDWTWTIQRVALVALVATVVESLPITEVVDDNITVPLVSMVV
SMLSFGY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G04490 VTE5 vitamin E pathway gene 5 (.1) Potri.010G232600
[exp]
0 1
AT3G48560 TZP5, IMR1, ALS... TRIAZOLOPYRIMIDINE RESISTANT 5... Potri.012G098300
[exp]
5.47 0.9290
AT5G42130 AtMfl1 MitoFerrinLike1, Mitochondrial... Potri.005G189600
[exp]
12.36 0.9256
AT4G34740 CIA1, ATASE2, A... CHLOROPLAST IMPORT APPARATUS 1... Potri.004G164000
[exp]
18.33 0.9152
AT1G26220 Acyl-CoA N-acyltransferases (N... Potri.008G113600
[exp]
22.49 0.9286
AT2G35830 unknown protein Potri.010G217500
[exp]
25.29 0.9214
AT1G45170 unknown protein Potri.002G262700
[exp]
35.49 0.8838
AT5G08050 Protein of unknown function (D... Potri.015G058600
[exp]
39.49 0.9142
AT1G09795 HISN1B, ATATP-P... ATP phosphoribosyl transferase... Potri.019G057200
[exp]
41.80 0.9084
AT1G74040 IPMS2, MAML-3, ... SOPROPYLMALATE SYNTHASE 2, 2-i... Potri.005G083100
[exp]
42.60 0.8771
AT1G67740 YCF32, PSBY photosystem II BY (.1) Potri.008G181900
[exp]
45.05 0.9155 PSBY.1

Potri.010G232600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.