Plant FIBer expression Database

Potri.010G233100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52210 489 / 2e-174 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
AT3G20650 85 / 4e-18 mRNA capping enzyme family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G130100
[exp]
79 / 4e-16 AT3G20650 582 / 0.0 mRNA capping enzyme family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037917
[exp]
542 / 0 AT3G52210 474 / 2e-165 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Lus10038644
[exp]
541 / 0 AT3G52210 477 / 3e-169 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Lus10003803
[exp]
87 / 2e-18 AT3G20650 581 / 0.0 mRNA capping enzyme family protein (.1.2)
Lus10010478
[exp]
82 / 1e-16 AT3G20650 570 / 0.0 mRNA capping enzyme family protein (.1.2)
Lus10039035
[exp]
72 / 9e-14 AT3G20650 485 / 2e-172 mRNA capping enzyme family protein (.1.2)
Lus10027333
[exp]
73 / 1e-13 AT3G20650 482 / 4e-169 mRNA capping enzyme family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF13649 Methyltransf_25 Methyltransferase domain
Representative CDS sequence
>Potri.010G233100.2 pacid=42799763 polypeptide=Potri.010G233100.2.p locus=Potri.010G233100 ID=Potri.010G233100.2.v4.1 annot-version=v4.1
ATGAGCGGGTTTCCGATACCGAGAACTGAGTCAACTCACCATCGACTCTACGAGTTCGCTAAATCTGCCATCATTAAAATCTTTGCCCACCCCTATGCCA
CTGTATGTGATTTGTATTGTGGAGGAGGAGTGGACATAGAGAAATGGGACGCTGCTCAAATCACTCACTACATTGGAATCGATGTAGCATCATCAGGAAT
AAGTGAAGTAAAAGAAACATGGGAGAGTCTGAAGAAAAATTACACTGCTGATTTCTTTCAAGCCGACCCTTGTTCTGAAAATTTTGAAACCCAGTTGCAG
GAAAAGGCCAATCAAGCTGATTTAGTTTGCTGTTTGCAGAATTTGCAGTTGTGTTTTGAGACCGAGGAGAGTGCAAGGAAGCTTCTACATAATGTGGCGT
CGTTGCTTAAACCGGGGGGTTATTTTTTTGGGCAAAGTACCAGAAGAATGTTGAAGCACAAGTTCAAAACTCTGGCAAAGTACCAGAAGAATGTTGAAGC
ATACCATAACAGAAGCGGCAGCATGAAGCCAAACATTGTTCCCAATTGCATTCGATCAGAAAGCTACATGATCACTTTCGAAGTAGAGGAAGAGAAGTTT
CCATTATTTGGGAAGAAGTACCAGTTAAAATTTGCCCACGACATCTCTGCAGAAACCCACTGCTTGGTACATTTTCCAAGTTTGATAAGGTTGGCCAGGG
AAGCTGGTCTGGAGTATGTGGAAATTCAGAACTTGACTGAATTTTATGATGATAATAGAACTCAATTTGCAGGTATGATAATGAATGCTGGTCTGAACCT
GGTGGATCCTAGAGGGAGACTTCTTCCTCGATCATATGATGTCTTAGGCCTATATACTACATTTATATTTCAGAAGCCTGATCCAGATGTTGCTCCCCCT
CTTACCACCCCACTATTACAGCATGATGGTTACACTATTGATGAGAGCGAGTGGCAAGCACCTGAGTGGCAAGGAACCCTATGGAGAGACGATGAAAAGA
ATGCACATCCAGAGCAGCAGCCTCCTCCTCCTCCTCCACCTCTTGGACTTGGAAAGATTAGTGAACAGAAGGGGATATTGGGTCCTGGCCCGGCAGATTT
ACGTTTCTCAGAGGCACTTTGA
AA sequence
>Potri.010G233100.2 pacid=42799763 polypeptide=Potri.010G233100.2.p locus=Potri.010G233100 ID=Potri.010G233100.2.v4.1 annot-version=v4.1
MSGFPIPRTESTHHRLYEFAKSAIIKIFAHPYATVCDLYCGGGVDIEKWDAAQITHYIGIDVASSGISEVKETWESLKKNYTADFFQADPCSENFETQLQ
EKANQADLVCCLQNLQLCFETEESARKLLHNVASLLKPGGYFFGQSTRRMLKHKFKTLAKYQKNVEAYHNRSGSMKPNIVPNCIRSESYMITFEVEEEKF
PLFGKKYQLKFAHDISAETHCLVHFPSLIRLAREAGLEYVEIQNLTEFYDDNRTQFAGMIMNAGLNLVDPRGRLLPRSYDVLGLYTTFIFQKPDPDVAPP
LTTPLLQHDGYTIDESEWQAPEWQGTLWRDDEKNAHPEQQPPPPPPPLGLGKISEQKGILGPGPADLRFSEAL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G52210 S-adenosyl-L-methionine-depend... Potri.010G233100
[exp]
0 1
AT5G48030 GFA2 gametophytic factor 2 (.1) Potri.001G271300
[exp]
2.00 0.8752 Pt-GFA2.2
AT1G24290 AAA-type ATPase family protein... Potri.011G023800
[exp]
3.46 0.8460
AT3G21090 ABCG15 ATP-binding cassette G15, ABC-... Potri.006G049000
[exp]
4.89 0.8700
AT5G15700 DNA/RNA polymerases superfamil... Potri.004G111600
[exp]
5.74 0.8588
AT1G63250 DEA(D/H)-box RNA helicase fami... Potri.003G124100
[exp]
9.48 0.8186
AT2G01080 Late embryogenesis abundant (L... Potri.003G021934
[exp]
10.39 0.7608
AT3G62330 Zinc knuckle (CCHC-type) famil... Potri.014G118100
[exp]
11.83 0.8403
AT5G26860 LON1, LON_ARA_A... lon protease 1 (.1) Potri.013G008900
[exp]
12.48 0.8087 Pt-LON_ARA_ARA.1
AT1G13030 sphere organelles protein-rela... Potri.010G048700
[exp]
12.56 0.7461
AT3G04800 ATTIM23-3 translocase inner membrane sub... Potri.005G051800
[exp]
13.26 0.8054

Potri.010G233100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.