Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10030 434 / 3e-148 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G18680 258 / 3e-82 Amino acid kinase family protein (.1) AT3G54390 80 / 2e-16 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G14180 73 / 1e-13 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT2G44730 72 / 2e-13 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G58630 71 / 4e-13 Trihelix sequence-specific DNA binding transcription factors (.1) AT5G05550 68 / 1e-12 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G11100 64 / 2e-11 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G24490 65 / 3e-11 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G24860 58 / 4e-09 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G027000 [exp] 706 / 0 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.006G117300 [exp] 460 / 3e-159 AT3G10030 591 / 0.0 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.005G057700 [exp] 253 / 2e-80 AT3G18680 467 / 1e-166 Amino acid kinase family protein (.1) Potri.003G195300 [exp] 80 / 3e-16 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 79 / 3e-16 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.001G113600 [exp] 78 / 8e-16 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.001G028400 [exp] 79 / 9e-16 AT3G54390 297 / 6e-100 sequence-specific DNA binding transcription factors (.1) Potri.001G179800 [exp] 73 / 1e-13 AT3G24490 206 / 2e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.014G051200 [exp] 71 / 5e-13 AT2G44730 239 / 3e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008988 [exp] 525 / 0 AT3G10030 450 / 3e-154 aspartate/glutamate/uridylate kinase family protein (.1.2) Lus10020884 [exp] 251 / 7e-80 AT3G18680 452 / 8e-161 Amino acid kinase family protein (.1) Lus10033492 [exp] 234 / 2e-73 AT3G18680 438 / 4e-155 Amino acid kinase family protein (.1) Lus10015282 [exp] 76 / 4e-16 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10024143 [exp] 79 / 1e-15 AT3G54390 172 / 2e-50 sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 77 / 2e-15 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10007273 [exp] 76 / 5e-15 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025406 [exp] 75 / 9e-15 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10020652 [exp] 67 / 1e-11 AT5G16860 344 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019388 [exp] 65 / 6e-11 AT3G24490 200 / 2e-60 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00696 [poplar] [flax] AA_kinase Amino acid kinase family CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G233500.2 pacid=42800070 polypeptide=Potri.010G233500.2.p locus=Potri.010G233500 ID=Potri.010G233500.2.v4.1 annot-version=v4.1 ATGTCCACCGACGATTTCCCCCTCCTCGACGCGCCGCCTCCTCACCCTACAACGCGCCACCCAGATGCCGCCTCCGTCACGACAACCGGCGATTACTACT ACTCCGATCACGACAAATCGTCCGCCACACCCTCCTCGAAACGCAACCACCAAAACCACTACTACAACAACAACAATAAGAGATCGAAATCAAACAGCAA CACAGAGTTAGAATCCAGCGATTACCGAGATTACAGGAAGGATAGAGAGGAATGGAGCGATACGGCGATATCGTGTTTGCTGGAGGCGTACACGGAGAAA TTTAATCAGTTGAATAGAGGGAATTTGAGAGGGAGAGATTGGGAGGAAGTAGCGGAAGCTGTGAGTGAGAGAGGAGGGAGTAATAATAAGAAGAGTGTGG AGCAGTGTAAGAATAAGATTGATAATTTGAAGAAGAGGTATAAAGTGGAGTTACAGAGGATTAGTGGGAGTGGGAGTAGTTGGCATTGGTTTAAACATAT CGAGGTGATCATGGGGAATGCGTGCAATGGGAAGAGTAGTGGTGGTGGTGCTGCTGCTGCTGCTGGGGGAGATAGTGAGGGTGGTGGTGGAGGGAGTTGT GGGAATGCTAATGTGGTGGTTAAGCAAGTTAAAAGGTATACATCTGGCAGTGCTGCCTTTGCTAATAGTCTCAAAACTAAACCGGTGACGAATTTAAAAT GGCGGAGAGTAGTGTTTAAAATCAGCGGTTCTGCATTGGCTGGGAATTGCCAGAATATTGACCCCAAGGTAGCTATGCAGATTGCTCAGGAAGTAGCAAC AGCTAGCCGTGTTGGACTGGAGATAGCGATTGTTCTTGGAGGTCGTAATTTCTTTTGTGGAGAATCGTGGATTTCTGCTACTGGCTTAGAGAGGCCTACT GCATGCCAGATTGGCATGATGGCAACAGTTATGAATTCAGTTTTGCTTCAATCAGCCTTGGAGAAGCACGGTGTTCAAGCTCGTGTGCAAAGTGCATTTG CAATGCCAGAGTTAGCTGAACCCTATAGCAGGCAACGGGCCATCCGACATCTCGAGAAAGGAAGAGTTGTCATATTTGGTGGTGTTGGTGCTGGTGCTGG GAATCCTCTATTTACTACTGACACGGCAGCTGCTTTGAGAGCTTCTGAGATCAATGCAGATGCACTCCTTAAAGGTACCATTGTTAATGGCGTCTATGAT AGCCATGCTGGTAGCAGCAATATAATACTGGATCACATATCATTCAGAGACGTGGTTTCGAGGGGGGCTACCTCAATGGACATGATGGCAATTACGTACT GTGAAGAGAATGGGATTCCTGTGGTGGTCTTTAATTTGCTCGAGCCTGGGAACATCTCAAGAGCATTATGTGGAGACCAAGTTGGCACTTTAATTGATCA AGCAGGAAGGATTAGTTAA
AA sequence Show only first row Show all	>Potri.010G233500.2 pacid=42800070 polypeptide=Potri.010G233500.2.p locus=Potri.010G233500 ID=Potri.010G233500.2.v4.1 annot-version=v4.1 MSTDDFPLLDAPPPHPTTRHPDAASVTTTGDYYYSDHDKSSATPSSKRNHQNHYYNNNNKRSKSNSNTELESSDYRDYRKDREEWSDTAISCLLEAYTEK FNQLNRGNLRGRDWEEVAEAVSERGGSNNKKSVEQCKNKIDNLKKRYKVELQRISGSGSSWHWFKHIEVIMGNACNGKSSGGGAAAAAGGDSEGGGGGSC GNANVVVKQVKRYTSGSAAFANSLKTKPVTNLKWRRVVFKISGSALAGNCQNIDPKVAMQIAQEVATASRVGLEIAIVLGGRNFFCGESWISATGLERPT ACQIGMMATVMNSVLLQSALEKHGVQARVQSAFAMPELAEPYSRQRAIRHLEKGRVVIFGGVGAGAGNPLFTTDTAAALRASEINADALLKGTIVNGVYD SHAGSSNIILDHISFRDVVSRGATSMDMMAITYCEENGIPVVVFNLLEPGNISRALCGDQVGTLIDQAGRIS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Potri.010G233500 [exp]	0	1
					Potri.002G220667 [exp]	4.24	0.8919
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Potri.004G130600 [exp]	4.47	0.8833
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.013G077900 [exp]	4.47	0.8813
AT5G06350			ARM repeat superfamily protein...		Potri.011G095700 [exp]	8.48	0.8891
AT2G26100			Galactosyltransferase family p...		Potri.018G053150 [exp]	10.24	0.8799
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Potri.001G350400 [exp]	11.74	0.8812
AT1G18950			DDT domain superfamily (.1)		Potri.012G072200 [exp]	12.00	0.8737
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.005G192900 [exp]	13.34	0.7654	GBF4.2
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.017G057100 [exp]	14.14	0.8466
AT2G37320			Tetratricopeptide repeat (TPR)...		Potri.006G215866 [exp]	16.52	0.8523

Compare expression of checked genes

Potri.010G233500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.