Plant FIBer expression Database

Potri.010G233600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G10550 1077 / 0 MTM1, AtMTM1 Arabidopsis thaliana myotubularin 1, Myotubularin-like phosphatases II superfamily (.1)
AT5G04540 1011 / 0 Myotubularin-like phosphatases II superfamily (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G026900
[exp]
1444 / 0 AT3G10550 1082 / 0.0 Arabidopsis thaliana myotubularin 1, Myotubularin-like phosphatases II superfamily (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038641
[exp]
1213 / 0 AT3G10550 1133 / 0.0 Arabidopsis thaliana myotubularin 1, Myotubularin-like phosphatases II superfamily (.1)
Lus10037915
[exp]
1101 / 0 AT3G10550 1034 / 0.0 Arabidopsis thaliana myotubularin 1, Myotubularin-like phosphatases II superfamily (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0031 Phosphatase PF06602 Myotub-related Myotubularin-like phosphatase domain
Representative CDS sequence
>Potri.010G233600.1 pacid=42798705 polypeptide=Potri.010G233600.1.p locus=Potri.010G233600 ID=Potri.010G233600.1.v4.1 annot-version=v4.1
ATGTCCGCGTCACGGCGATCAACGTCGCTAAGTGACTCCTCCGCCGAGATCGAGAGGATGGAAAGCACCGGTAGCTGGGATGACGCTCTCGACTGGTTCA
AACTGGAGGTGCAGCATCCAGCGTCACGCTCGGTTTCGCATCACGCTAATTACAAGTGCTTGCTTGAGGCAGAGCGTGTTGTAGTCGAGGGATATGGTGT
TGTTCTTATCAACACTGATGAGGCAGGTACCTTGATAGTCACTAATTTTCGTCTTATTTTCTTGAGTGAGGGAACAGAAAATATCATTGCACTCGGAACA
ATTCCGCTAGCAACAATTGAGAAGTTCAGCAAAATGGTTGTAAAAAGTCAATCAGCCCCTCGTCAATCTGAGAAGACTCCATCGCAGCGTCTTCTCCAAG
TCATTGGGAGAGATATGAGAATTATTGTTTTTGGTTTCCGGCCCAAAACAAAGCAGAGACGGGCTATATATGATGGGTTATTAAGGTGCACAAAACCATC
AAGACCCTGGGATCTTTATGCTTTTAACTGTGGACCGTCCAAATTTACTAATGCTAACCCAAAAGTGCGCTTGTTGAATGAGTGCTTCCGTCTTCTTGGA
AAAGGCTTTTGTAGTGCATCAATAGATATGATCGACAAAGGGTCATATACACTGTCTAATGAGTTGTGGAGAATCAGTAATGTAAATTCCGACTACATAA
TGTCCCCGAGTTACCCTTTTGCCTTAATTGTTCCAAAATCCATCAGTGATGAAGAAGTGGTCCATGCATCCAGCTTTCGTTCCAAGGGTCGCTTGCCTGT
AGTTTCTTGGTGTCATCCTGGAACTGGAGCAGTCCTTGCACGTTCATCTCAACCCTTAGTTGGTCTAATGATGAATATGAGGAGCAACACAGATGAAAAG
CTTGTCGCAGCACTTTGCTCTCAACTTGGTGGTGATAAAAAGGGGCGGAGGAAGTTATATATTGCTGACGCAAGACCTAGAAAAAATGCTTTAGCAAATG
TGGCTATGGGAGGTGGCTCAGAATCACCATCACACTATTTTCAATCCGAGGTAGTTTTCTTTGGGATAGACAACATACATGCTATGCGTGAGAGTCTTTC
TCGGCTTAGGGACTACTTGGATACTCATGGCTCCACTTCATCAGACGGAACATTATCACTCTTGAGACATGGTGGCTGGACCTGGGGTGGAGGCAATCTC
AGCAGTATGTCTGCTTCTGTGGCAACCCTCGGTGACAGTGGTTGGTTAATACATGTCCAAAGTGTCTTGGCTGGTTCAGCTTGGATTGCTGCTCGTGTTG
CTTTGGAATCAGCATCAGTACTTGTACATTGCAGCGATGGATGGGATAGAACTAGTCAGCTGATTTCACTTGCTAATTTGTTGCTTGACCCTTACTATCG
GACATTCACTGGGTTTCAGGCGCTCATTGAAAAAGACTGGCTAGCATTTGGTCATCCATTTGAAGAGCGAATGGGAATGCCAACTGTATCTGGATGCAGT
GATAAGCCTCTTGATTTATCTAGGCAATCTTCAGTTGGGAGTTTTCCATCATCACCCATGCGACAGTCATCAGGATCATTCGCACCTCAAGCTCCTAGTT
CTTCTCATGCACAGAACCAATATTCTCCTATATTTTTGCAGTGGATTGATTGTGTTTCACAATTATTGCGGATGTATCCCTTTGCTTTTGAGTTCTCCTC
GGCTTTCCTGGTGGACTTATTGGACTGTGTGCTTTCATGTCGTTTTGGTAACTTCTTCTGCAATAGTGAGAAGGAAAGGCAGCTAGTTGGTGTCTCTGAA
TCTTGTGGATGCTTGTGGGCTTATTTGGCTGATTTGCGTTCTTCAGAGGGAAGGTCTCATGTGCACTATAACCTTTTCTATAGTCCTCTGAAACATAAGG
GCCCATTGTTACCTCCAGCAGCAGCTTTAGCCCCGACTCTATGGCCCCAGTTCCATCTTCGGTGGGCTTGTCCTTCAGAAGCCCAAGCTGGGGAGCTTGA
AGCTCAATGCCGGAATATGTCTTTAAAATTCTCTGAACTACAGAAGGCAAAAGAAGGAGCAGAGAAGAAAGCTAAAGAAACCACAAATGCCATGGAATCA
TTATCTGCAGAACTACAGAATGAGAAGCGACTCAGTAGCTCTGCTATGGCATTGGCTAAGAGGGCGAGCAAGGAAAGTGCAGCCATAAAGCGAGCCATAC
AGTCATTGGGATGCAAAGTTCATTTTGCTGGCGGTGGTGACACTACTGTTGATATCGAGACCAACCCTATGGGAATTACACAGGAATCTGTGTTTTCTCA
CTCAAAAAGAGAATCTGATGGTATTGTCCAGCATCAATACAATTCAGATCTATCGATTTCCATTTCAGCAGTGGCAGATGATGTTGTTTCCAACAATCCA
CTCGATCGAGTGTGTGGTGCTATATGCCCTTCACGCGCAAGAGATGGAGGCTGCCGGTGGCCAGAGGCTGGTTGTGCTCAATTATGTAGTCAGTTTATTG
GGGTGAAGGCAAACTACGACGCAATTGATAGTCTCTCTATATACGAAACTTATTTTGACACAAGAGAAGAAGGGAAATAG
AA sequence
>Potri.010G233600.1 pacid=42798705 polypeptide=Potri.010G233600.1.p locus=Potri.010G233600 ID=Potri.010G233600.1.v4.1 annot-version=v4.1
MSASRRSTSLSDSSAEIERMESTGSWDDALDWFKLEVQHPASRSVSHHANYKCLLEAERVVVEGYGVVLINTDEAGTLIVTNFRLIFLSEGTENIIALGT
IPLATIEKFSKMVVKSQSAPRQSEKTPSQRLLQVIGRDMRIIVFGFRPKTKQRRAIYDGLLRCTKPSRPWDLYAFNCGPSKFTNANPKVRLLNECFRLLG
KGFCSASIDMIDKGSYTLSNELWRISNVNSDYIMSPSYPFALIVPKSISDEEVVHASSFRSKGRLPVVSWCHPGTGAVLARSSQPLVGLMMNMRSNTDEK
LVAALCSQLGGDKKGRRKLYIADARPRKNALANVAMGGGSESPSHYFQSEVVFFGIDNIHAMRESLSRLRDYLDTHGSTSSDGTLSLLRHGGWTWGGGNL
SSMSASVATLGDSGWLIHVQSVLAGSAWIAARVALESASVLVHCSDGWDRTSQLISLANLLLDPYYRTFTGFQALIEKDWLAFGHPFEERMGMPTVSGCS
DKPLDLSRQSSVGSFPSSPMRQSSGSFAPQAPSSSHAQNQYSPIFLQWIDCVSQLLRMYPFAFEFSSAFLVDLLDCVLSCRFGNFFCNSEKERQLVGVSE
SCGCLWAYLADLRSSEGRSHVHYNLFYSPLKHKGPLLPPAAALAPTLWPQFHLRWACPSEAQAGELEAQCRNMSLKFSELQKAKEGAEKKAKETTNAMES
LSAELQNEKRLSSSAMALAKRASKESAAIKRAIQSLGCKVHFAGGGDTTVDIETNPMGITQESVFSHSKRESDGIVQHQYNSDLSISISAVADDVVSNNP
LDRVCGAICPSRARDGGCRWPEAGCAQLCSQFIGVKANYDAIDSLSIYETYFDTREEGK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G10550 MTM1, AtMTM1 Arabidopsis thaliana myotubula... Potri.010G233600
[exp]
0 1
AT3G58640 Mitogen activated protein kina... Potri.002G214400
[exp]
2.44 0.7600
AT3G15920 Phox (PX) domain-containing pr... Potri.001G201900
[exp]
3.00 0.7780
AT1G48310 CHR18, CHA18 chromatin remodeling factor18 ... Potri.010G003300
[exp]
4.12 0.7990
AT5G50530 CBS / octicosapeptide/Phox/Bem... Potri.015G098100
[exp]
4.47 0.7787
AT5G11470 bromo-adjacent homology (BAH) ... Potri.006G244000
[exp]
5.00 0.7672
AT1G59750 ARF ARF1 auxin response factor 1 (.1.2.... Potri.003G001000
[exp]
7.21 0.7697 Pt-ARF1.11
AT3G27530 MAG4, GC6 MAIGO 4, golgin candidate 6 (.... Potri.001G343500
[exp]
10.58 0.6969
AT1G10130 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE C... Potri.014G014700
[exp]
28.56 0.7427 Pt-ECA3.3
AT4G19040 EDR2 ENHANCED DISEASE RESISTANCE 2 ... Potri.003G100600
[exp]
29.51 0.6702
AT1G02960 unknown protein Potri.002G208058
[exp]
32.24 0.7230

Potri.010G233600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.