Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04550 677 / 0 Protein of unknown function (DUF668) (.1) AT3G23160 200 / 6e-57 Protein of unknown function (DUF668) (.1) AT5G51670 194 / 5e-55 Protein of unknown function (DUF668) (.1) AT1G34320 86 / 4e-17 Protein of unknown function (DUF668) (.1) AT5G08660 80 / 2e-15 Protein of unknown function (DUF668) (.1) AT1G30755 73 / 3e-13 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G026800 [exp] 1053 / 0 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.006G117000 [exp] 414 / 2e-138 AT5G04550 356 / 8e-116 Protein of unknown function (DUF668) (.1) Potri.010G074000 [exp] 354 / 2e-114 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Potri.008G164700 [exp] 352 / 1e-113 AT3G23160 661 / 0.0 Protein of unknown function (DUF668) (.1) Potri.012G129900 [exp] 219 / 2e-64 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.015G131800 [exp] 199 / 4e-57 AT5G51670 442 / 1e-152 Protein of unknown function (DUF668) (.1) Potri.019G001500 [exp] 91 / 5e-19 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1) Potri.001G305800 [exp] 82 / 6e-16 AT1G34320 593 / 0.0 Protein of unknown function (DUF668) (.1) Potri.013G115300 [exp] 79 / 3e-15 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008987 [exp] 609 / 0 AT5G04550 566 / 0.0 Protein of unknown function (DUF668) (.1) Lus10028839 [exp] 273 / 1e-84 AT5G04550 282 / 2e-89 Protein of unknown function (DUF668) (.1) Lus10021210 [exp] 215 / 8e-62 AT3G23160 659 / 0.0 Protein of unknown function (DUF668) (.1) Lus10022201 [exp] 212 / 9e-61 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Lus10002840 [exp] 191 / 4e-53 AT5G04550 308 / 8e-98 Protein of unknown function (DUF668) (.1) Lus10021138 [exp] 185 / 4e-51 AT5G04550 300 / 2e-94 Protein of unknown function (DUF668) (.1) Lus10031110 [exp] 174 / 8e-48 AT5G51670 454 / 8e-157 Protein of unknown function (DUF668) (.1) Lus10031691 [exp] 174 / 8e-48 AT5G51670 452 / 2e-156 Protein of unknown function (DUF668) (.1) Lus10017260 [exp] 80 / 2e-15 AT1G30755 567 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017136 [exp] 79 / 3e-15 AT1G34320 570 / 0.0 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05003 [poplar] [flax] DUF668 Protein of unknown function (DUF668) PF11961 [poplar] [flax] DUF3475 Domain of unknown function (DUF3475)
Representative CDS sequence Show only first row Show all	>Potri.010G233700.1 pacid=42796775 polypeptide=Potri.010G233700.1.p locus=Potri.010G233700 ID=Potri.010G233700.1.v4.1 annot-version=v4.1 ATGGTTGCTGAAACGTGGTTTCGTGGTCTGTGGAAGATTTCACAGAAGCATGAACCCGGTCCTCAGAAGGCAGTTGTTGGAGTTTTGGCCTTTGAAGTTA CAAGCTTGATGTCAAAGCTGGTTCATCTTTGGCAGTCTTTGAGTGATAAGCAGGTTATTAGGTTGAGAGAAGAGATCGCAAATTCTGAGGGTATAAAAAA GCTTATAGCTGAGGATGATGATTTCATTGGTCGTTTGATTTGTTTAGAGATGATGGAAAGTATGGTACATGTTGCAAAACCCGTGGCCAGACTAGGTAAT AAATGTAGTGATCCTAGTTTGAAGGGCTTTGAGCATCTTTTTGATGAAATGATCAAGATTCATGCTGACCCATATGGGTGGGGATTTACTTGTAAGAAGA TGGACAAGAAAGTTAAAAAGATGGAGCGTTTTATTTCAGTTAATGCTACTTTGTATCAAGAGATTGAAATGCTTGCTGATCTCGAACAGACTGTGAGGAG AATGAAGGGCAGCAATCCTCAGCCAGATAATTTACTTGACTATCAGAAGAAGCTTGTATGGAAGCAGCAGGAAGTGAAAAATCTGAGGGAGATCTCACTC TGGAATAGAACTTATGATTATACAGTTCGCCTCTTAGTAAGATCATTGTTCACTATATATAGTAGAATCAGTCATGTGTTTGGAATTAATCGAACAGCAT ACTCTGGGCAATCAAAAGCTCTGAATTCTGACTATATTTACCAAAGCCAGTCAGTTTCTGCATTGCTGCAGTCTTCTGTTCATCCATCTGAGGATAGTAC TCTTCCTAGATTTTCTTCTGCCCCCCTTGGTAAGTTCACTGCAAATTCTGGCCCAATTTCAAAATCGAACAAAAATAATTCCTATTCAGGTCCTCTTGGT GGCTCAATCACAAAGTCAGGCCCTATTTCTGGAAAGAACAGGAACGTGAACTTTTTCTCAGGTCCACTTGGGGGGGCAACGACTAAGTCGGGCCCAATTT CAGGAATAGCTAAAGCTGGCAAGAAGTTTTGGCGAACGCCTCAATCACCTGCCTTTCTGGGAAGGAAACCGCCTTCAAAGCCAAATCGGTTGACTCAAGT GGGACCTTTTAAAGGATGCATGGCAGCTTCAAACACTTCTCCTGTCGCCAATTGCTACTTAAATTTATCTGATGTTCATTCCAGAACCCTCAACGGAGCC AAGGAAAGTAATGCTGACCATCTTCCTCCTGGAAGTGCAAGTCATACCGGTCCATCAATCTTCAGTTCACAGCGTAAATTGTTGCAAGCTCTCCCCGAAA CCCTTGGCGGTGCTGCTTTAGCATTGCACTATGCTAATGTTATTGTTGTAATCGAGAAGCTAGCTGCATCTCCTCACTTGATTGGCCATGATGCGAGAGA TGACCTGTACAATATGTTGCCTGCAAGCGTGAGAACTGCTCTGAGGGAAAGGCTAAAGCCATACTCCAAGAGCTTGTGTTCGTCAGTTTATGATACTGTG CTTGCAGGAGAGTGGACTGAGGCAATGGCATCAATATTAGAATGGTTGGCTCCACTTGCTCATAATATGATAAGATGGCAATCGGAGCGAAGTTACGAGC AACAAACCTTTGTTTCTAGGACAAACGTGCTTCTGGTACAGACCCTTTACTTTGCCAATCAAGAAAAGACAGAAGCAGCAATAACTGAGCTTCTGGTTGG TCTGAATTACATTTGGAGGTTTGGGCGAGGACTCAATGCACAAGCCTTGCAGGAGGATGCTAGCAGTATAATGTTTGATGAATACTTGGAGGTGGAGAAG TGA
AA sequence Show only first row Show all	>Potri.010G233700.1 pacid=42796775 polypeptide=Potri.010G233700.1.p locus=Potri.010G233700 ID=Potri.010G233700.1.v4.1 annot-version=v4.1 MVAETWFRGLWKISQKHEPGPQKAVVGVLAFEVTSLMSKLVHLWQSLSDKQVIRLREEIANSEGIKKLIAEDDDFIGRLICLEMMESMVHVAKPVARLGN KCSDPSLKGFEHLFDEMIKIHADPYGWGFTCKKMDKKVKKMERFISVNATLYQEIEMLADLEQTVRRMKGSNPQPDNLLDYQKKLVWKQQEVKNLREISL WNRTYDYTVRLLVRSLFTIYSRISHVFGINRTAYSGQSKALNSDYIYQSQSVSALLQSSVHPSEDSTLPRFSSAPLGKFTANSGPISKSNKNNSYSGPLG GSITKSGPISGKNRNVNFFSGPLGGATTKSGPISGIAKAGKKFWRTPQSPAFLGRKPPSKPNRLTQVGPFKGCMAASNTSPVANCYLNLSDVHSRTLNGA KESNADHLPPGSASHTGPSIFSSQRKLLQALPETLGGAALALHYANVIVVIEKLAASPHLIGHDARDDLYNMLPASVRTALRERLKPYSKSLCSSVYDTV LAGEWTEAMASILEWLAPLAHNMIRWQSERSYEQQTFVSRTNVLLVQTLYFANQEKTEAAITELLVGLNYIWRFGRGLNAQALQEDASSIMFDEYLEVEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04550			Protein of unknown function (D...		Potri.010G233700 [exp]	0	1
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Potri.001G337400 [exp]	5.56	0.7343	ACG12.1
AT1G13340			Regulator of Vps4 activity in ...		Potri.010G127000 [exp]	8.24	0.8109
AT4G14010		RALFL32	ralf-like 32 (.1)		Potri.017G059800 [exp]	10.39	0.7669	RALFL32.1
AT3G58900			F-box/RNI-like superfamily pro...		Potri.017G119200 [exp]	10.95	0.7629
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Potri.001G361700 [exp]	11.22	0.7452
					Potri.001G306932 [exp]	12.24	0.7791
AT2G43320			S-adenosyl-L-methionine-depend...		Potri.007G127300 [exp]	15.71	0.7487
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Potri.001G205200 [exp]	16.00	0.7817	Pt-PIN2.1,PIN10
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Potri.013G147300 [exp]	17.54	0.7444
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Potri.016G111000 [exp]	17.83	0.8040

Compare expression of checked genes

Potri.010G233700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.