Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28600 417 / 5e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 62 / 5e-10 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 59 / 8e-09 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G217800 [exp] 63 / 4e-10 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G007900 [exp] 61 / 1e-09 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G061900 [exp] 55 / 1e-07 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G196000 [exp] 50 / 4e-06 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034162 [exp] 369 / 1e-123 AT2G28600 311 / 3e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043421 [exp] 367 / 6e-123 AT2G28600 311 / 5e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030075 [exp] 60 / 3e-09 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000894 [exp] 53 / 3e-07 AT1G31970 555 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) Lus10006736 [exp] 50 / 3e-06 AT3G02065 686 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10020088 [exp] 49 / 1e-05 AT3G02065 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Potri.010G234000.1 pacid=42797165 polypeptide=Potri.010G234000.1.p locus=Potri.010G234000 ID=Potri.010G234000.1.v4.1 annot-version=v4.1 ATGGCAAAAGGTGATGATGCTGTGGCGAAAAAGAAGAACAAAGAAAGAAGAAAGAAGATGCAAAAAGAGGGTTCAAGTGTGTCAGCTCGTGTTGCTTCCA TTATAGCTGCCAAAAAGCGCCGTTTATCTGGAAAACGCCGGATGTGCCAGGGAATGTGTTTTAGCCTTCCTACACTAGATGATCCATTCAATGACAGGAA TGGTAAACTGGAGTTCCAAAAAAAGGAAACGAAAAATAAGCCTTCGGCCCGAAAGAATGAGAAGGCATTTGTCAAGGGAAAGATGAAGGGTATAGAAAAT GATAAGGCTATGAGTATGGGCTCAGAGATTAGAAAGTCACTTATTTCTAATAACAATTTAGGGATCGACCAGGAAAAAGCAAAAGTGCAGATGAATGGAA AAGCCGGACGTGGACGTCAAAGACAGGCCCGGGAGAACATGGATTGCCCATCAAAATTTCTTATGTATAGCTTGAATGAAATAGAGAAAGCCTTGCGACA TGAGGGAACCTATAATGATGATGAGGACGAGTCGTTGTTTGTTAGCCCTTGGGGAGTTGAGTTTTTGAAATGTTATTCGACTGGAAAAGATATATTGGAG ACAAGTGGATCTTCATGCACTACTGAGCAAATTGCATGGGTAGTTTCCATGGCTGCCGATATTATTGTAAGAAAGGAGGAAGAAGATTTATCAGTACCTA GTCCATCTTTTCTATTTCTTGTACCATCCCAAGAAGAAGCTGTCAAGGTACGTATGGTGTGCAAACCTCTGAAAGCTCTTGGCATACATACAGTGAGCGT ACATCCTGGTTCCTCCATAGATCACCAGATACATGGTTTGGCGAGTTGTGAACCTGAATTTCTTGTGTCCACACCTGATAGACTTTTGGAGCTTGTTTCC CTGAAGGCTATTGATATATCAGGGGTCTCCTTTTTGGTTGTTGATGGAGTGGAATCTCTTTATAATGGTGGTTGCCTTAACGCCCTTAAATCCATTAGGC AATCTATTTCTGGAAGTCTTCGTACTGTGGTTTTCAACAATTTCTTTAGTGGTGCTTGTGTTCCGGTTCTACAGAATCTTCTCCTGGGATCAATTTGTAG ATTATCGATCGATCAATCTATCCCCATTCAAAGTGCATGCATTGTTCAGACAATAAATCTGTGCACTTCCGAGGAAGAAAGACTTCTAAAGAGTATACAA GTTTTGAATGATGCTTGTGGCAGCCAACTCTGCTCCCAGCCTTTAAAGGTGCTATATGTAGTTGGAAATGATAACAGCTCTTTCAATTTAGTCAAGATGC TTGAAATCAATGGTTATACTGTTTCTGTGGAATCAAATCGCAGTATTTCAAATGATGATAACAGCCTGGATACGAATATCAGAATGAAACCTGTGGTCTC TGTGATCAATGTGGAGCGCATTTCTACCACCAATTTAGCTTTCTATGAAACTGTAATCTTACCCAACTTCGTGCCATCAATTGATAATTATGTTCAAATC CTCACGAGAATGGCTAGGCACAGTATCAAAGGCAACTTCCATAGCTTTTTGACCAAAGAAGATGCACTGATAGCTAGACCACTTATGGGAATTCTGGAGC AATGTGGGCAGGCGGTGCCTGAGGCCTTAAGAAACTTGCATCTCACATCATCCGTGCCAGAATCATGA
AA sequence Show only first row Show all	>Potri.010G234000.1 pacid=42797165 polypeptide=Potri.010G234000.1.p locus=Potri.010G234000 ID=Potri.010G234000.1.v4.1 annot-version=v4.1 MAKGDDAVAKKKNKERRKKMQKEGSSVSARVASIIAAKKRRLSGKRRMCQGMCFSLPTLDDPFNDRNGKLEFQKKETKNKPSARKNEKAFVKGKMKGIEN DKAMSMGSEIRKSLISNNNLGIDQEKAKVQMNGKAGRGRQRQARENMDCPSKFLMYSLNEIEKALRHEGTYNDDEDESLFVSPWGVEFLKCYSTGKDILE TSGSSCTTEQIAWVVSMAADIIVRKEEEDLSVPSPSFLFLVPSQEEAVKVRMVCKPLKALGIHTVSVHPGSSIDHQIHGLASCEPEFLVSTPDRLLELVS LKAIDISGVSFLVVDGVESLYNGGCLNALKSIRQSISGSLRTVVFNNFFSGACVPVLQNLLLGSICRLSIDQSIPIQSACIVQTINLCTSEEERLLKSIQ VLNDACGSQLCSQPLKVLYVVGNDNSSFNLVKMLEINGYTVSVESNRSISNDDNSLDTNIRMKPVVSVINVERISTTNLAFYETVILPNFVPSIDNYVQI LTRMARHSIKGNFHSFLTKEDALIARPLMGILEQCGQAVPEALRNLHLTSSVPES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28600			P-loop containing nucleoside t...		Potri.010G234000 [exp]	0	1
AT1G20220			Alba DNA/RNA-binding protein (...		Potri.005G194600 [exp]	1.00	0.8670
AT1G36990			unknown protein		Potri.005G172100 [exp]	5.47	0.8180
AT4G28200			unknown protein		Potri.007G040000 [exp]	6.63	0.8401
AT2G40360			Transducin/WD40 repeat-like su...		Potri.004G222500 [exp]	11.48	0.8073
AT3G13990			Kinase-related protein of unkn...		Potri.001G170700 [exp]	17.32	0.8079
AT3G13940			DNA binding;DNA-directed RNA p...		Potri.001G198600 [exp]	20.39	0.7747
AT4G28010			Tetratricopeptide repeat (TPR)...		Potri.009G069600 [exp]	23.23	0.7771
AT2G34040			Apoptosis inhibitory protein 5...		Potri.011G062500 [exp]	23.66	0.7418
AT2G18220			Noc2p family (.1)		Potri.001G012800 [exp]	24.97	0.7861
AT5G06360			Ribosomal protein S8e family p...		Potri.006G203400 [exp]	25.45	0.7566

Compare expression of checked genes

Potri.010G234000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.