Plant FIBer expression Database

Potri.010G234200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G29034 67 / 7e-17 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033010
[exp]
62 / 6e-15 AT3G29034 57 / 6e-13 unknown protein
PFAM info
Representative CDS sequence
>Potri.010G234200.1 pacid=42799581 polypeptide=Potri.010G234200.1.p locus=Potri.010G234200 ID=Potri.010G234200.1.v4.1 annot-version=v4.1
ATGAATCGGAACTTAGGTGCTTTTTGGATTGGATTGGTTGGTGCAACCATCACCTTGTCTGCTTACTCACAGACTTTTGTCTCTCCTACACAGTGTATCA
CCATTGGTCTCTTTGTTCTCATGTTTGGCTTGCTTGTCAGAGAAGGTTTCATTTCCCTTTAG
AA sequence
>Potri.010G234200.1 pacid=42799581 polypeptide=Potri.010G234200.1.p locus=Potri.010G234200 ID=Potri.010G234200.1.v4.1 annot-version=v4.1
MNRNLGAFWIGLVGATITLSAYSQTFVSPTQCITIGLFVLMFGLLVREGFISL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G29034 unknown protein Potri.010G234200
[exp]
0 1
AT1G12890 AP2_ERF Integrase-type DNA-binding sup... Potri.019G088000
[exp]
2.00 0.9619 ERF62
AT5G44440 FAD-binding Berberine family p... Potri.001G462000
[exp]
2.82 0.9614
AT5G57620 MYB ATMYB36 myb domain protein 36 (.1) Potri.018G095900
[exp]
6.70 0.9589
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.003G099100
[exp]
7.34 0.9554
AT5G17430 AP2_ERF BBM BABY BOOM, Integrase-type DNA-... Potri.010G181000
[exp]
7.74 0.9569
AT1G79580 NAC ANAC033, SMB, N... NAC (No Apical Meristem) domai... Potri.010G176600
[exp]
8.83 0.9562
AT4G17800 AT-hook Predicted AT-hook DNA-binding ... Potri.003G091300
[exp]
9.38 0.9571
AT4G10350 NAC BRN2, NST4, ANA... BEARSKIN 2, NAC domain contain... Potri.019G066000
[exp]
10.90 0.9561
AT4G25650 TIC55-IV, PTC52... TRANSLOCON AT THE INNER ENVELO... Potri.003G219400
[exp]
13.63 0.9392
AT1G18590 SOT17, ATSOT17,... ARABIDOPSIS SULFOTRANSFERASE 5... Potri.011G048400
[exp]
14.83 0.9547

Potri.010G234200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.