Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04560 1028 / 0 DME1, DME DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) AT2G36490 725 / 0 DML1, ROS1 REPRESSOR OF SILENCING1, demeter-like 1 (.1) AT3G10010 603 / 0 DML2 demeter-like 2 (.1) AT4G34060 483 / 6e-147 DML3 demeter-like protein 3 (.1.2) AT4G04957 77 / 1e-16 Domain of unknown function (DUF1985) (.1) AT3G47830 74 / 8e-14 DNA glycosylase superfamily protein (.1) AT1G05900 47 / 7e-05 ATNTH2 endonuclease III 2 (.1.2) AT2G31450 47 / 0.0001 ATNTH1 DNA glycosylase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G025900 [exp] 2724 / 0 AT5G04560 1030 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.006G116000 [exp] 1011 / 0 AT2G36490 729 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Potri.001G150001 [exp] 541 / 7e-164 AT5G04560 560 / 2e-171 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.015G071300 [exp] 74 / 2e-13 AT3G47830 343 / 9e-119 DNA glycosylase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027713 [exp] 694 / 0 AT5G04560 913 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10035576 [exp] 690 / 0 AT2G36490 832 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Lus10014367 [exp] 340 / 2e-94 AT5G04560 540 / 1e-164 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10023864 [exp] 340 / 3e-94 AT5G04560 555 / 2e-170 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10034120 [exp] 72 / 9e-13 AT3G47830 351 / 2e-121 DNA glycosylase superfamily protein (.1) Lus10043463 [exp] 58 / 7e-08 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF15628 [poplar] [flax] RRM_DME RRM in Demeter PF15629 [poplar] [flax] Perm-CXXC Permuted single zf-CXXC unit
Representative CDS sequence Show only first row Show all	>Potri.010G234400.4 pacid=42799829 polypeptide=Potri.010G234400.4.p locus=Potri.010G234400 ID=Potri.010G234400.4.v4.1 annot-version=v4.1 ATGGGTTCAAGGATTAATTATGGAGAAAGATTGATTCTGAGTTCGTTCTTACCAGCAACGCCAGAGAAGCCCATTCCAACAAGATCCAATTTGATGCCAG CTGACGGGCAAGGGAACCTACAGGGCAGAACGAATTGGCAGCTGGCTGGATTTGCCGATGGATGTGTACAAGATGTGTCGAATTACAGCAGAGCGGCCCA GCATACTGACCAGATTGATCAACTGTTTAGAAATGGCGGGGATAATATTAGGAATGCAGGTTTCGAAGAGGTGAAAAGAATGAGCAATACTACACGCAAT TATATAGAGAGTCAAACTGGAGGTCTGGGCAGTGGTTTATTAGCAAATATTTTGGACCATTCAAATATATCTACAATTACCTCTTCAATGGCACCTCCTG GTATAAGCACAAGCATGGTTTGGAGGCCTTCGTTTCCCAACTTGCATCCCCAAGTCAACAATTACAGAGAACCCAATTTGTTGCTCGGAAACCAAACTCA CTGCTCAGGCTTACGGCATTTGGGTAGCAACTATATCTCATCCCAGGAACCCAATTATGAACCTATGATGCCTTGCCCTCATAACTATGATCTAAACTTT CCACCAAGAATGGAAGCTGATGCAGCCTCATATTTTACCACCTCTTTTAAATTGGCCACGGTAGTACCGGATCAGTGCAAGAGATTGGAGAGTAGGCTTT CTGCAACAGCAAGTCCCTCGCAAGAAAAAAACTCAAGTGGGGAAAAGGAGAAAACTGATTTAGTCATATTCAAAGAGTGCGAAGCCAATCAACATAATTC AAAGGAGCTCTCATGCAACATTACAGACGCACCATCTGCTGTCATATCTACACCATTTGAGGAAGCAAAAGATCTAGCAACAGCAAATGCACAAGGCATC GACCTTAATAGAACACCACAGCAGAAACCTCAAAAGAGAAGAAAGCATAGGCCCAAGGTGATTGTGGAAGGCAAGCCAAAAAGGACTCCCAAGGCTGCAA CCACAAAAATTACTGATCCCAAGGAGAAGCCAATTGAAAAGAGGAAGTATGTTCGCAAGGCTTTGAAAGAGCCAGCAACTAAACCTACTGAATCTACCGT AGATACTGCACCTCCCAGCTCTGCAAAGAGGAAGTATGTGCGCAAGAAGGCCCTGGATGAATCAGCAGTTCAACACACAGATTCTATTGGAGAGACCATA AATACCCATGCTGTAAAGAGAAAGTATGTGCGCAAGAAAGACCTAAACAAATCAGCAAATCGACATGCAGACTCCACCGTGGAGATTACACAATCCAGTT CAGCTGATGCAAAATCATGTAGAAGAGCATTGAGGTTTGATTTGGAAACTGCAACAGACAGGAGCTGCAGTAATGCAGCTGCTCAGCAGGACATGCTGAA TCAAAAAAGAGGGACTTTTGATCTGAATGCAAGTCTTCAAGTGGCAGATTTAAGCACCACAACTTCACAGATGAGCCAACAGCATAGGTTACTGGTAGAA AACCAGCAATCAGGTGCTCCAAGTAACCAGACACCTTTTATGAATCAGCCACGTGGTGACTATATATCAATTTCAGAAATACAAGTAGTGGCAGCGGAAC TAACTCCAAGAAAAAACATGCACATGGAGAAATTAAACCTCAATGCGGGGGATGTGGAGAGAAGTATCCATGCACAAGGAATTGGTCAGGTTGTGTTTCC AGAAAAAGGACCAGAGTGGACTAGACAAATAACTTCTCAGAATAACTCTCAATCAGCACAAAAGATAACACCTTATTTAATTGAGGGCAGAGGATTCAAG AGAGAACACTTTCATATTAAGAAAACAAACCCGTGTACAGCATATCCAGTGGGCTCATTGACTGATGGATATGACCAAAATGGCAGCATTCCAGGTTCTG GATGTTCAGAGACCCAGAAAAGAAAGAAAACAGAGGATGGAATTCAAACAAACACACACAGCATATCTTCTTTTGTTTCAAAAGTTAAATATCCTGGTGA GTGGTATGTTCACTCTATGGCTCTGCAGAACCTTCCAAAGCAATGTATTTCACCTCAACCACATTTATGCCTAGAAATGCTGGGAGAGACTAATGGATCG ACTCAGGTCCAAAACTCCCTCTGCCCCACCACTATAGAAACTTCTCACAGGCTTTCACAAACGTCTCTCAAAACAAGCCGTGCATCGGATAACCAACTGC AACCCAAAACTTGCAACGCTGAAATGTCAAGAATTCAGCAAATGTCCGAAGCTACTGTGCCCATATCAATTCCATCTGAAAAGGGTAAGATTCCACAAGA ACCAAAGGATGACTTGAAAGTTCATCAGCAGCCATATGCAAAGAGAAGAGGGCGACCAGCAAAGCAGACTTTCTCCTCTACAATAGAACAAATCATATAC CAGATGGAGGGCCTCCGTCTCAATGCAGGGAGCAAGAAAATAGAAAACAAAGAGCAAAATGCACTTGTTCCTTACAAAGGAGATGGCAAACTTGTTCCCT ATGATGGGTTTGAAGTTGTCAAGAAACACAAGCCAAGGCCTAAAGTAGATCTTGACCCAGAGTCAGACAGAGTATGGAAACTGCTGATGGGGAAAGAAGG AAGTCAAGGCCTTGAAGGAACTGACAAGGGAAAGGAGCAATGGTGGGGGGAGGAGAGAAAAGTTTTTCATGGGCGAGTTGATTCATTCATTGCAAGAATG CATCTCGTGCAAGGAGATAGGCGCTTTTCAAAATGGAAGGGATCAGTTGTTGATTCAGTAATAGGAGTTTTCCTAACTCAAAATGTTTCAGATCATCTGT CAAGCTCTGCCTTCATGTCTCTAGCTTCATTGTTTCCTCTGAAGTTGAGGAGCAGTGGAGCCTGTGACAGAGAAAGGACAAGCATCGTCATTGAAGAACC AGATACCTGCATTCTAAACCCAAATGATATCAAATGGAACAGCAATCCACTCTACAATCAAAGCTCCGTGACACACCATGGATCAGCAGAACCTCATAAA GACTCTGAAACCTTGTTTATAGAAAGAGCAAGCATGGTAGAGACACAAAGTCACAGCCTGGAGGAAGAATTTGTATTATCACAAGATTCTTTCGATTCCT CAACTGTCCAAGCAAATGGAGTCAGATCCTACTCGGGCTCCAACTCTGAAGCAGAAGATCCTGCTACTGGGTGCAAACCTAGCATGAATGATGATTTATC TTTCATGGATCTTTTACAGATGGAGAGTCCCACCTTGCTAGGAGAATTTTATGGTTGTGAGGGTGGGAGCTCACTGTTTCATAAGGAATCCAGGCATGAA AAGGAACAAGCAGAAGATTTACAAAACAGGCAGCCAGGACCTGGATTGGAAAGATTAGGTAATCTGAACTGCTTTTCTACATATAATCAGCATTTCGATT ATTGCAATCCACAGATGCTAGGGAAAGTGGTTCCTTGCAGTGACTACGGGTTGCTACACATGACTTCACAATCCAATGTACAGCAAGCAGAAGGCTTCGA ATTGTACAGTGAAGAAAACATATCTTCTTGGCTGTCATATTCTTCCAGATTCGACAAAGAAAAGGCTGCAACCTGCACAAGCAAAGCTGTTGGGCAAGAG GCAGAAAGTGTAGGTAAAACTGCTGCCAAGCAATATGAGTTGCCAAGGTATGGACAAAGCAGCTCTCAGTCTTGCCATGAAAGACAAGTTGATGAGAGGA ACAAGACCTTGCAATGGCAAAGCATGTCAGTTGGCGGACCTGTAAACCTTGCTGAAGAACTGCCTAAGAAGCAAAACAGTTACAGACAGCAAGTCTCAAG CCTCACAGGAAACATTTTTGACGTTGAGAGAATCACTTCAGTGAATAAGCAAACCCCTCTAGAAAACAATGTGGTTGACCCAAATACAAAGGAGAAAGTA CATCATAATAACAGGGAAAACCTCAAGGAAAATGCAAGTACCTCAAAAGCAAGAAAAGGAAAAGTGGAGGGTGAGAAAAAGGATGCATTTGACTGGGATA GTTTAAGGAAGCAAGTGCAGGCAAATGGAAGAAAAGAGAGAGCCAAAGACACAATGGATTCCTTGGACTATGAAGCAGTGCGAAGTGCTAGGGTCAAGGA GATTTCTGATGCGATAAAAGAAAGAGGGATGAATAACATGCTAGCAGAACGAATCCAGGAATTCCTCAACCGACTGGTAAGGGAACACGGAAGCATCGAT TTGGAATGGTTAAGAGATGTGCCCCCTGACAAAGCAAAGGATTATCTGCTAAGTATAAGGGGGTTGGGGTTGAAAAGCGTGGAGTGTGTGAGGCTCCTGA CACTTCATCATCTTGCCTTTCCAGTTGACACAAATGTCGGGAGAATCGCAGTTCGACTAGGATGGGTCCCTCTCCAGCCATTGCCAGAGTCACTTCAGTT GCACCTCCTAGAACTGTACCCAATACTCGAGTCAATTCAGAAATATCTCTGGCCAAGATTGTGCAAACTAGATCAAAGAACATTGTATGAATTGCATTAC CAGATGATCACATTTGGAAAGGTTTTTTGCACAAAGAGTAGACCCAACTGTAATGCATGTCCCATGAGAGCAGAATGTAGACATTTTGCAAGTGCCTTTG CAAGTGCTAGGCTTGCATTACCTGGACCAGAAGAGAAGGGTATAACAACTTCAACTGTTCCCTTTATGCCTGAAAGAAGCCCCGGCATAGGTATCAATCC CATGCCATTACCTCCACCCGAGGACAACCCACATAAAAGACACGGGTCTGATATTGGCAGTTGCGTGCCCATTATTGAAGAGCCAGCAACACCAGATCAA GAGAACACTGAATTAACAGAGACTGATATTGAGGATTTTGGAGAAGATCCTGATGAAATACCCACAATAAAACTGAACATGGAAGAGTTCACTGAGAATT TACAGAATTACATGCATACAAACTTGGAGCTCCAAGAAGGCGACATGTCCAAGGCCTTAGTTGCTTTGAATCCAAATGCTTCTATACCCACACCCAAATT GAAGAATGTTAGTCGTCTACGGACAGAACACCAAGTGTATGAACTTCCAGATTCACATCCTCTCCTTGAGGGGATGGATAGAAGAGAACCTGATGATCCT AGTCCATACCTTCTAGCAATATGGACACCAGGTGAAACTGCAAATTCTATTGAGCCACCAGACCAACAATGCCAGTCCAGAGAACCAAACAAATTGTGCG ATGAGAAGACATGTTTTTCATGCAATAGTATCAGAGAAGCTAATTCACAAACAGTAAGAGGAACCCTTCTGATACCTTGTAGAACAGCAATGAGAGGAAG CTTCCCACTGAATGGAACGTACTTTCAAGTGAACGAGATGTTTGCAGATCACGAATCTAGCTTAAACCCAATTGATGTTCCAAGATCATTGATATGGAAT TTGCCGAGACGAATTGTCTACTTTGGAACCTCTGTATCATCAATATTTAAAGGACTTTCAACAGAAGGAATTCAGTTCTGCTTTTGGAGAGGGTTTGTTT GTGTGAGGGGGTTCGACCAGAAAACAAGAGCACCCCGTCCTCTTAAGGCCAGATTACACTTTCCTGCAAGTCGGTTGGTAAAGACAAAGAACGAGAAAAA ATGA
AA sequence Show only first row Show all	>Potri.010G234400.4 pacid=42799829 polypeptide=Potri.010G234400.4.p locus=Potri.010G234400 ID=Potri.010G234400.4.v4.1 annot-version=v4.1 MGSRINYGERLILSSFLPATPEKPIPTRSNLMPADGQGNLQGRTNWQLAGFADGCVQDVSNYSRAAQHTDQIDQLFRNGGDNIRNAGFEEVKRMSNTTRN YIESQTGGLGSGLLANILDHSNISTITSSMAPPGISTSMVWRPSFPNLHPQVNNYREPNLLLGNQTHCSGLRHLGSNYISSQEPNYEPMMPCPHNYDLNF PPRMEADAASYFTTSFKLATVVPDQCKRLESRLSATASPSQEKNSSGEKEKTDLVIFKECEANQHNSKELSCNITDAPSAVISTPFEEAKDLATANAQGI DLNRTPQQKPQKRRKHRPKVIVEGKPKRTPKAATTKITDPKEKPIEKRKYVRKALKEPATKPTESTVDTAPPSSAKRKYVRKKALDESAVQHTDSIGETI NTHAVKRKYVRKKDLNKSANRHADSTVEITQSSSADAKSCRRALRFDLETATDRSCSNAAAQQDMLNQKRGTFDLNASLQVADLSTTTSQMSQQHRLLVE NQQSGAPSNQTPFMNQPRGDYISISEIQVVAAELTPRKNMHMEKLNLNAGDVERSIHAQGIGQVVFPEKGPEWTRQITSQNNSQSAQKITPYLIEGRGFK REHFHIKKTNPCTAYPVGSLTDGYDQNGSIPGSGCSETQKRKKTEDGIQTNTHSISSFVSKVKYPGEWYVHSMALQNLPKQCISPQPHLCLEMLGETNGS TQVQNSLCPTTIETSHRLSQTSLKTSRASDNQLQPKTCNAEMSRIQQMSEATVPISIPSEKGKIPQEPKDDLKVHQQPYAKRRGRPAKQTFSSTIEQIIY QMEGLRLNAGSKKIENKEQNALVPYKGDGKLVPYDGFEVVKKHKPRPKVDLDPESDRVWKLLMGKEGSQGLEGTDKGKEQWWGEERKVFHGRVDSFIARM HLVQGDRRFSKWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLASLFPLKLRSSGACDRERTSIVIEEPDTCILNPNDIKWNSNPLYNQSSVTHHGSAEPHK DSETLFIERASMVETQSHSLEEEFVLSQDSFDSSTVQANGVRSYSGSNSEAEDPATGCKPSMNDDLSFMDLLQMESPTLLGEFYGCEGGSSLFHKESRHE KEQAEDLQNRQPGPGLERLGNLNCFSTYNQHFDYCNPQMLGKVVPCSDYGLLHMTSQSNVQQAEGFELYSEENISSWLSYSSRFDKEKAATCTSKAVGQE AESVGKTAAKQYELPRYGQSSSQSCHERQVDERNKTLQWQSMSVGGPVNLAEELPKKQNSYRQQVSSLTGNIFDVERITSVNKQTPLENNVVDPNTKEKV HHNNRENLKENASTSKARKGKVEGEKKDAFDWDSLRKQVQANGRKERAKDTMDSLDYEAVRSARVKEISDAIKERGMNNMLAERIQEFLNRLVREHGSID LEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPILESIQKYLWPRLCKLDQRTLYELHY QMITFGKVFCTKSRPNCNACPMRAECRHFASAFASARLALPGPEEKGITTSTVPFMPERSPGIGINPMPLPPPEDNPHKRHGSDIGSCVPIIEEPATPDQ ENTELTETDIEDFGEDPDEIPTIKLNMEEFTENLQNYMHTNLELQEGDMSKALVALNPNASIPTPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDP SPYLLAIWTPGETANSIEPPDQQCQSREPNKLCDEKTCFSCNSIREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEMFADHESSLNPIDVPRSLIWN LPRRIVYFGTSVSSIFKGLSTEGIQFCFWRGFVCVRGFDQKTRAPRPLKARLHFPASRLVKTKNEKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Potri.010G234400 [exp]	0	1
AT3G59090			unknown protein		Potri.002G058500 [exp]	11.22	0.6385
					Potri.010G220800 [exp]	12.00	0.6782
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Potri.018G139800 [exp]	19.49	0.6363	Pt-ACA8.6
AT4G17140			pleckstrin homology (PH) domai...		Potri.001G148800 [exp]	46.86	0.6197
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Potri.008G025900 [exp]	50.99	0.6068
AT5G08630			DDT domain-containing protein ...		Potri.019G008541 [exp]	54.33	0.5679
AT1G68130	C2H2ZnF	IDD14beta, IDD1...	indeterminate(ID)-domain 14 (....		Potri.010G101200 [exp]	54.49	0.6112
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Potri.019G043400 [exp]	61.15	0.5778
AT4G33640			unknown protein		Potri.017G042432 [exp]	62.25	0.6200
AT4G27220			NB-ARC domain-containing disea...		Potri.005G062130 [exp]	64.53	0.5815

Compare expression of checked genes

Potri.010G234400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.