Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74580 1032 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 352 / 2e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 333 / 6e-103 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 309 / 5e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 303 / 8e-92 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 298 / 3e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 297 / 1e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09060 298 / 2e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 293 / 4e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 287 / 7e-87 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015900 [exp] 350 / 8e-110 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 344 / 3e-107 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 332 / 8e-103 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 316 / 3e-97 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 310 / 6e-96 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G069600 [exp] 307 / 2e-93 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 303 / 2e-92 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 301 / 3e-92 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 303 / 7e-92 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038974 [exp] 1028 / 0 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027267 [exp] 601 / 0 AT1G74580 813 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 352 / 8e-110 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 330 / 7e-101 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 314 / 1e-95 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 310 / 6e-94 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 303 / 7e-92 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030513 [exp] 301 / 2e-91 AT3G09060 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 299 / 1e-88 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 294 / 2e-87 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.010G234500.10 pacid=42799118 polypeptide=Potri.010G234500.10.p locus=Potri.010G234500 ID=Potri.010G234500.10.v4.1 annot-version=v4.1 ATGAGTGCTTCTCTGCTTCCTAAACACGTGGCAGCTGTTTTGAAGCAGCAAAAGGATCCTCTCAAAGCCCTTGAAATGTTCAACAAAGTTAAAAGAGAAG ATGGGTTCAAGCACAGTTTGTTAACTTACAAATGCATTATCCAAAAACTTGGGTTTCACGGGAATTTCGTGGCCATGGAGAACGTGCTTGCGGAGACGAG GATGGATATCGATAATAGTTTGCTCGAAGGAGTGTATATTGGAGCTATGAAAAGTTATGGAAGGAAAGGGAAGGTTCAAGAGGCTGTTGATGTGTTTGAA AGAATGGATTTTTATAACTGTGAGCCATCTGTTTTATCCTATAATGCAATTATGAATATATTGGTGGAATCTGGGTACTTCAAGCAAGCTCATAAAGTGT TTTTAAGAATGAAGAATGTGGGGATTGTTCCTGATGTTTATACATTCACTATTAGGATCAAGTCGTTCTGTAGGACGAAAAGGCCTCACTCTGCTTTAAG GCTTCTTAATAACATGGTTTCTCAAGGGTGTCAGCTTAATGCAGTTGCCTATTGTACTGTTGTTGCTGGGTTTTATGAAGAGAATTACCGAGTTGAGGCA TATGAATTGTTTAATGATATGCTCAGGATAGGTATTTTCCCTGATGTTTCTACTTTCAACAAGCTTTTACACACTCTTTGTAAGAAGGGGGAGGTCCAAG AAAGTGAAAGACTTCTCAACAAGGTGCTGAAGAAGGGTATGTGCTCAAATTTGTTTACATTTAATATTTTCATCCAAGGGCTTTGCAGAAAGGGTATGCT TAGTGGGGCTATGAGTATGTTGGATAGTGTTATTAGAGAAGGCCTAACTCCTGATGTGGTCACGTATAACACGTTAATTTGTGGATTGTGTAAAAACTCT AATGTAGTAGAAGCTGAGAAGTATCTGCACAAACTGGTGAATGGTGGTTTAGAGCCCGATGGTTTCACTTACAACACTTTAATTGATGGATATTGCAAAA TGGGTATGCTACAAAATGCTGAGAAGATTCTTCAAGGGGCAATTTGCAAGGGATTTGTGCCTGATGAGTTCACATATTGCTCCCTAATTAACGGGTTATG CCAGAATGATGAAATTGACCGTGCCCTGGCTCTTTTCAACGCGGCATTGGGAAAAGGATTGAAGCCTACTGTCATCCTATACAACATGCTAATTAAAGGG TTGTGTCAGGAAGGACTTATCTTGCAAGCCTTGCAGATGATGAATGAGATGTCAGAAAATGGCTGCAGCTCTGATATATGGACTTATAATTTAGTTATAA ATGGATTGTGCAAGATGGGTTGTGTCTCCGATGCCAATAACCTAATGAATGATGCTATCGCCAAAGGATATGTTCCTGATGTTTTTACATTTAATACGTT GATTGATGGCTACTGTAAACAGTTGAAAATGGAAACAACAATTCAGATTCTGAATAAAATGTGGAGCCATGGTGTTACTCCTGATGTGATCACATATAAC TCTGTGTTGAATGGCCTCTCCAAGGCCGTAAAGAATGAAGATTTGATGGAAACTTTCGAAACGATGGTGGAGAAAGGGTGTGTCCCTAACAAAATCACAT ACAATATACTTACTGAGAGCCTCTGTAAAGCTGGGAAAGTAAATGAGGCTTTGGACTTGGTTGATGAAATACTAAACAAAGGCATTACACCAGATACTGT TAGTTTTGCTACAATCATCAGTGGGTTTGCCAATAATGGGGACCTGAAAGGAGCTTACCAGCTCTTTAGAAGAATGGGAGAACAATATAAGGTCTCACAT ACAACAGCAACGTATAACATAATGATCAATGCTTTTGCTGAGAAGCTAGATCTTCATATGGGGGAAAAACTTTTTCTTGAGATGGGTGCTGGAGGCTGCG CCCCAGACACGTACACTTATCGTGTCATGATCGATGGCTTTTGCATAACAGGAAACACTGATTCTGGATACAAGTTTCTACTGGAAATGATTGAGAAAGG GTTCATTCCATCACTGACAACGTTTGGGCGAGTAATAAATTGCCTTTGCGTGCAGCACAGAATTCACGAGGCAGTTGATATTATCCATTTTATGGTGCAC AATGGTATTGTCCCTGAGGTTGTGAATAGCATATCAGAGGCTGATAAGAAGGTGGTTGCAGCGCCTAAAATAGTTGTGGAAGATTTGTTGAAGAGAAGTT GTATAACTTACTATGCTTATGAACTTCTGTATGATGGTATTAGAGATAAAAAGACCCAAAAGCAAAAACTTCCAAATAGGCACTAA
AA sequence Show only first row Show all	>Potri.010G234500.10 pacid=42799118 polypeptide=Potri.010G234500.10.p locus=Potri.010G234500 ID=Potri.010G234500.10.v4.1 annot-version=v4.1 MSASLLPKHVAAVLKQQKDPLKALEMFNKVKREDGFKHSLLTYKCIIQKLGFHGNFVAMENVLAETRMDIDNSLLEGVYIGAMKSYGRKGKVQEAVDVFE RMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEA YELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNS NVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKG LCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYN SVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSH TTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRIHEAVDIIHFMVH NGIVPEVVNSISEADKKVVAAPKIVVEDLLKRSCITYYAYELLYDGIRDKKTQKQKLPNRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74580			Pentatricopeptide repeat (PPR)...		Potri.010G234500 [exp]	0	1
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Potri.005G215200 [exp]	1.00	0.8599
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Potri.008G122901 [exp]	2.82	0.8309
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.006G099302 [exp]	3.16	0.8382
AT5G28350			Quinoprotein amine dehydrogena...		Potri.002G162000 [exp]	5.00	0.7550
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Potri.008G142301 [exp]	7.14	0.7645
AT1G49180			protein kinase family protein ...		Potri.019G011300 [exp]	13.74	0.7618
AT3G17890			unknown protein		Potri.008G145400 [exp]	15.49	0.7492
AT1G12930			ARM repeat superfamily protein...		Potri.014G141100 [exp]	16.97	0.7665
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Potri.010G162500 [exp]	17.34	0.7308
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Potri.003G032300 [exp]	18.89	0.7265	ETR1.2

Compare expression of checked genes

Potri.010G234500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.