Plant FIBer expression Database

Potri.010G234600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G04610 397 / 1e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
AT2G31740 88 / 3e-18 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G317700
[exp]
76 / 1e-14 AT2G31740 886 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023784
[exp]
441 / 2e-152 AT5G04610 389 / 2e-132 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10003963
[exp]
439 / 1e-151 AT5G04610 374 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10016656
[exp]
81 / 5e-16 AT2G31740 895 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.010G234600.1 pacid=42797720 polypeptide=Potri.010G234600.1.p locus=Potri.010G234600 ID=Potri.010G234600.1.v4.1 annot-version=v4.1
ATGGCCCTTGACATAAAAACCTTCGAAACCATAATCCCCTCTCGTTTCCTCTCTTTCACAATACCCAACCCCGTACTCCCAACTCGCCTCCTCCGAGTTG
CGGTCCTCGACTCCCCAATCCAACCCACCGAGTCTCCTCAAGTCGCAGCTCTCTTTGTCCCTCAAACCCGTGAACCAGACTGGATTTTCTCAACCGAGTC
AGGTCACCTCCAGCTCCTCTTATCCTCTCCTGGAATCTCACGGCTCATATTGATCGGCAACAATCGAATCAACGGCCCTGATTCATCTCCATTGACTTAC
CACAAAAGGGAGGATGCCCAGTATGTAAAAAGTCTTGAAAATAGTTTAAAGCCTTTGTTTTTTGCTTTATCTCCTAAAGTTAGCGTTAAAGATGGGATTT
TTGATGTGCCTATTTTGGATTATGAAGATAATTTGATTTGTAGTGTGGTTTTAGAGAGACGTGCTGGTATTTTTGTTAGTGAAATGCTTGTTGAGGATAT
TGAGATTGAGAGTGATAGTGAATTGAGAGAGTTTAGGAGGAGATTGAGGTTCAAAAGAATGCCAAATTTGGTTCAAACAGAGATTCGAATCGTGCCTCAG
AAGGTTTTTGAGTTAGATCGTGTTAAGATTGGTGGAGAAGTGAAGTTTAGGCCTGACACTAAGGTTCTGGTGCATTCATATTTGATACCGATGGTAGCTA
GTCTCTCTTTGATTGGTTCTTGTATCGAGGATCGGTTTCGAAAAGGGTTAAAGCCTAAAGCTTTGTGTTTAGGTGTAGGTGGTGGAGCTTTACTTAGTTT
TCTGAGAACTCAATTGGGGTTTGAAGTTTTTGGTGTGGAAATGGATGAGGAGGTTTTGAGCGTTGCGAGGCAGTATTTTGGGCTGGAAGAAATTCAGGTT
TGTGTTGGGGATGCTATAGAATATGTAGAGAAGCTTGCGAGTAAAGATAGGGTGCTGGATTTGGTTTCAGGTGAAGATAACGGTGATTGTTATTTAAATC
ATGCAAATGTTTTTGATGCCAAGTTTGATGTCATTATGGTTGATTTAGATTCTTGTGATGCTAGAAATGGTGTCATTGCTCCGCCATTGGAATTTGTTAA
GAAGCACATTCTTCTGGCTGCTAGGTCTGTTCTTAGTGATTTTGGGATTTTTGTCATGAATGTGATTCCTCCGACTAGATTGTTCTATGATACATTGATA
CATGAGTTTCAGGAGATTTTTCATGAGCTGTATGAAATTGATGTTGGAAATGGAGAGAATTTTGTTCTTATTGCTAAAGTCTCGCCTGTTTCATCACCAC
TTAGTGAATGTGAGAATAGTTTTCTTCAGAAACTGAGGATAGCGATCTTGGGAAGATACTTGGATTCCATAAGGAAAATTTAA
AA sequence
>Potri.010G234600.1 pacid=42797720 polypeptide=Potri.010G234600.1.p locus=Potri.010G234600 ID=Potri.010G234600.1.v4.1 annot-version=v4.1
MALDIKTFETIIPSRFLSFTIPNPVLPTRLLRVAVLDSPIQPTESPQVAALFVPQTREPDWIFSTESGHLQLLLSSPGISRLILIGNNRINGPDSSPLTY
HKREDAQYVKSLENSLKPLFFALSPKVSVKDGIFDVPILDYEDNLICSVVLERRAGIFVSEMLVEDIEIESDSELREFRRRLRFKRMPNLVQTEIRIVPQ
KVFELDRVKIGGEVKFRPDTKVLVHSYLIPMVASLSLIGSCIEDRFRKGLKPKALCLGVGGGALLSFLRTQLGFEVFGVEMDEEVLSVARQYFGLEEIQV
CVGDAIEYVEKLASKDRVLDLVSGEDNGDCYLNHANVFDAKFDVIMVDLDSCDARNGVIAPPLEFVKKHILLAARSVLSDFGIFVMNVIPPTRLFYDTLI
HEFQEIFHELYEIDVGNGENFVLIAKVSPVSSPLSECENSFLQKLRIAILGRYLDSIRKI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G04610 S-adenosyl-L-methionine-depend... Potri.010G234600
[exp]
0 1
AT3G23900 RNA recognition motif (RRM)-co... Potri.017G058300
[exp]
9.89 0.7229
AT3G04160 unknown protein Potri.019G029400
[exp]
11.53 0.7387
AT1G28420 HD HB-1 homeobox-1 (.1) Potri.004G048675
[exp]
14.69 0.7217
AT5G16420 Pentatricopeptide repeat (PPR-... Potri.012G031600
[exp]
18.65 0.7102
AT1G21610 wound-responsive family protei... Potri.007G101201
[exp]
21.81 0.6852
Potri.001G293001
[exp]
23.45 0.6438
AT5G13530 KEG KEEP ON GOING, protein kinases... Potri.001G029600
[exp]
31.93 0.6903
AT4G32850 PAP(IV), PAP(IV... poly\(A\) polymerase IV, poly\... Potri.006G235400
[exp]
33.68 0.6908
AT4G00060 MEE44 maternal effect embryo arrest ... Potri.014G066000
[exp]
35.32 0.6834
AT3G08670 unknown protein Potri.006G110700
[exp]
38.74 0.6510

Potri.010G234600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.