Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CTR1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03730 655 / 0 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT4G24480 497 / 2e-163 Protein kinase superfamily protein (.1) AT5G49470 313 / 1e-98 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT5G11850 315 / 4e-95 Protein kinase superfamily protein (.1) AT1G67890 311 / 8e-95 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT1G08720 311 / 4e-93 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT1G73660 311 / 8e-93 protein tyrosine kinase family protein (.1) AT1G18160 311 / 8e-93 Protein kinase superfamily protein (.1) AT3G06640 296 / 3e-89 PAS domain-containing protein tyrosine kinase family protein (.1) AT3G06620 296 / 6e-89 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G025800 [exp] 1068 / 0 AT5G03730 670 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.016G095750 [exp] 731 / 0 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.006G115800 [exp] 715 / 0 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.002G111200 [exp] 499 / 2e-164 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.005G153100 [exp] 492 / 2e-161 AT4G24480 1019 / 0.0 Protein kinase superfamily protein (.1) Potri.015G040100 [exp] 318 / 9e-95 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.012G048400 [exp] 314 / 2e-93 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.018G053800 [exp] 310 / 7e-93 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.008G105100 [exp] 305 / 2e-92 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043428 [exp] 715 / 0 AT5G03730 710 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10023865 [exp] 696 / 0 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10014368 [exp] 693 / 0 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10034154 [exp] 617 / 0 AT5G03730 618 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10031341 [exp] 319 / 6e-97 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10027247 [exp] 316 / 8e-95 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10016912 [exp] 309 / 3e-94 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10004124 [exp] 310 / 2e-93 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10000937 [exp] 310 / 2e-93 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10028169 [exp] 303 / 2e-93 AT4G24480 823 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0125 [poplar] [flax] Peptidase_CA PF14381 [poplar] [flax] EDR1 Ethylene-responsive protein kinase Le-CTR1
Representative CDS sequence Show only first row Show all	>Potri.010G234700.4 pacid=42799161 polypeptide=Potri.010G234700.4.p locus=Potri.010G234700 ID=Potri.010G234700.4.v4.1 annot-version=v4.1 ATGGAGGAGTCTGGAAGTTGGTGTGAAGAAGCAACGATAAAGAGCTGGGCTAAACGAACGGAAGAGAGTTATCAGTTACAGCTCGCTCTGGCTTTGAGGC TATCTTCACAAGCTGCTTCAGCTAATGATCCCAGTTTCTTGGATTGGAATTCTAGTGATAGTAACAGAGGAGTTTCTTCTTTCTCTGATTCTCCTGAATC CCTTTCTCATCGTTTTTGGATACGAGCATCGCTAATTTTACTCATTCTTTCCGAATTCACTTCCCGAAAAATCTCAACCATTGAAGTGAATGGATGTTTG TCTTATAATGATAGAATTCCAGATGGGTTTTACGTAATGCATGGATTGGATCCTTATACATGGAGTATAAGTGCTGATAGTCGTGTCCCGTCTTTTGAAT CATTAAAGGCTGTCAATGATTTGTCAATAGAAGTGGTTTTGGTAGATAGATTGAGGGATCCTGGTTTGAAGGAGTTACATAATAGAGTTATTGGTCTTTG GAGTGGCTCGAATACAACAAAAGATGTGGTTGAGCAGCTTGCGAATCTTGTTTGTAATCGTATGGGGGGTGTTGTCTTCAATGAAGATGATGACACTTTC GCCAAATGCTGGAAGGAATGTACTGAAGTTATGAAAAGGCGTTTAGGTTCTGTTGTAATTCTGGTTGGAAGCTTAACGATCGGCCTCTGTGTTCATCGTG CATTACTGTTTAAAGTATTGGCAGACTCTATTAATTTGCCTTGCAGAATTGTTAACGGATGTAAATACTGCAGAAAAGATGTTGTTTCATCCTGTCTTGT TCAAGTTGGTGATGACAGGGAATACTTTGTTGATTTGCTTGGAAAGCCAGGAGCCCTAAGCCAGCCTGATTCCTCACTCAATTGTACATCTTCAATATTA GTTTCTTCACCATTGTCTCATCCAAGGTTTAAATCTATCCAAACAACTGAGGACTTCAGGACAATGGCAGCCAAACTCTATTTCCTTGACTGCCAGCCAC TTAATCTTGTGTTTGATAATCCTTCATCAGGCACTACTATTCATGAAGATGACAGATTCATTTCAAGGCTTGGTAAAGACATGAAGAACCTTCCACCCAC ATCAATCAACAAACATGAAGCTTCTCTGTCACCTCTGCACCAAGGAGTTGCTCAGAACATCATGCATGACATGGATCTGCAGGCGCCAAACTCATATAAT CCATTTCTGAATGTCGTAAAGACGAAGAACTTCGTTGAAGGTCCCAATGTGCCAAGTTCTATCCTACCAGTTAAGAAAAAACATACAGATCCTGTCATCT CTAATCCAAAGCCTGTTGCTACAAATAATTTGTTGTTCATGGAAATAAACCAGACAATACTAAGTAAATCAAACAATCAACTTCATCTCGAAGAGGAAGA TTTCGATGTTCCCTGGAGTGAACTTCTATTGAAGAAGAAAATTGGATCAGGCTCCTTTGGAACTGTCTATCATGCTGACTGGCGTGGTTCGGATGTTGCT GTCAAAATTCTCGAGGAGCAAGAATTTCACGCAGAGCGCTTTGAGGAATTTTTGAGTGAGGTTTCTATAATGAAACGTTTACGACATCCAAATATTGTTC TCTTTATGGGTGCTGTTACCCAACCCCCTAACTTGTCCATAGTTATGGAGTATTTATCAAGAGGCAGCTTGCACAAACTTTTACATCTGCCTGATGCTGC CTTGATACTGAATGAGAGGCGCCGCTTAAATATGGCGAATGATGTTGCAAAGGGAATGAACTATCTTCATCAGTTTAGACCTCCCATTATTCATCGTGAT TTGAAATCTCTAAATCTCTTAGTGGACAGTGCATACAAGGTCAAGATTTGTGATTTCGGTCTCTCGCGCTCAAAAGCGAAGACATATATTTCGTCGACAA ATGCTGCAGGGACTCCTGAGTGGATGGCCCCAGAAGTACTCCGTAATGAGCAATCAAATGAAAAATCAGATGTTTACAGCTTTGGTGTAGTCTTGTGGGA ACTTATGACCCTGCAACATCCATGGAGAAATTTAAAACAAGCACAGATCATTGCTGCTGTTGGTTTTATGGGCGGAAGGCTTGAGATTCCAAGCAATGTA AATCCTTCAGTGGCTGCCTTGATTAAGGTCTGCTTGGATAGCGAGCCCTCAAAACGTCCTTCATTCTCTTATATCATGAAAACTTTACAGGAGCTGATAA ACGACTCCATCTCCCAACCAGTTGCTCCTCGAGTAATTCGATGA
AA sequence Show only first row Show all	>Potri.010G234700.4 pacid=42799161 polypeptide=Potri.010G234700.4.p locus=Potri.010G234700 ID=Potri.010G234700.4.v4.1 annot-version=v4.1 MEESGSWCEEATIKSWAKRTEESYQLQLALALRLSSQAASANDPSFLDWNSSDSNRGVSSFSDSPESLSHRFWIRASLILLILSEFTSRKISTIEVNGCL SYNDRIPDGFYVMHGLDPYTWSISADSRVPSFESLKAVNDLSIEVVLVDRLRDPGLKELHNRVIGLWSGSNTTKDVVEQLANLVCNRMGGVVFNEDDDTF AKCWKECTEVMKRRLGSVVILVGSLTIGLCVHRALLFKVLADSINLPCRIVNGCKYCRKDVVSSCLVQVGDDREYFVDLLGKPGALSQPDSSLNCTSSIL VSSPLSHPRFKSIQTTEDFRTMAAKLYFLDCQPLNLVFDNPSSGTTIHEDDRFISRLGKDMKNLPPTSINKHEASLSPLHQGVAQNIMHDMDLQAPNSYN PFLNVVKTKNFVEGPNVPSSILPVKKKHTDPVISNPKPVATNNLLFMEINQTILSKSNNQLHLEEEDFDVPWSELLLKKKIGSGSFGTVYHADWRGSDVA VKILEEQEFHAERFEEFLSEVSIMKRLRHPNIVLFMGAVTQPPNLSIVMEYLSRGSLHKLLHLPDAALILNERRRLNMANDVAKGMNYLHQFRPPIIHRD LKSLNLLVDSAYKVKICDFGLSRSKAKTYISSTNAAGTPEWMAPEVLRNEQSNEKSDVYSFGVVLWELMTLQHPWRNLKQAQIIAAVGFMGGRLEIPSNV NPSVAALIKVCLDSEPSKRPSFSYIMKTLQELINDSISQPVAPRVIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.010G234700 [exp]	0	1	CTR1.4
AT4G34040			RING/U-box superfamily protein...		Potri.007G045500 [exp]	1.73	0.8612
AT4G08850			Leucine-rich repeat receptor-l...		Potri.003G108200 [exp]	2.00	0.8485
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.010G101800 [exp]	3.16	0.8636	Pt-ANN5.1
AT3G54790			ARM repeat superfamily protein...		Potri.002G037700 [exp]	6.32	0.8263
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.006G231200 [exp]	6.92	0.7700
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.017G135800 [exp]	7.93	0.8298
AT3G62270			HCO3- transporter family (.1)		Potri.008G100300 [exp]	11.83	0.7992
AT1G15670			Galactose oxidase/kelch repeat...		Potri.001G178500 [exp]	15.00	0.8211
AT1G07710			Ankyrin repeat family protein ...		Potri.005G069400 [exp]	15.87	0.7785
AT3G51130			unknown protein		Potri.007G015800 [exp]	16.24	0.7756

Compare expression of checked genes

Potri.010G234700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.