Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20823 79 / 5e-18 RING/U-box superfamily protein (.1) AT3G16720 81 / 9e-18 ATL2 TOXICOS EN LEVADURA 2 (.1) AT4G10160 78 / 2e-17 RING/U-box superfamily protein (.1) AT4G10150 78 / 2e-17 RING/U-box superfamily protein (.1) AT1G76410 77 / 2e-17 ATL8 RING/U-box superfamily protein (.1) AT4G28890 80 / 3e-17 RING/U-box superfamily protein (.1) AT3G14320 77 / 5e-17 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT4G09120 78 / 7e-17 RING/U-box superfamily protein (.1) AT2G20030 78 / 9e-17 RING/U-box superfamily protein (.1) AT1G49220 76 / 2e-16 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G025300 [exp] 356 / 4e-126 AT4G40070 86 / 7e-20 RING/U-box superfamily protein (.1) Potri.014G076800 [exp] 159 / 5e-49 AT4G10150 84 / 1e-19 RING/U-box superfamily protein (.1) Potri.002G153400 [exp] 149 / 7e-45 AT2G20030 83 / 8e-19 RING/U-box superfamily protein (.1) Potri.008G018900 [exp] 79 / 3e-18 AT2G35910 100 / 2e-26 RING/U-box superfamily protein (.1) Potri.011G063100 [exp] 78 / 2e-17 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 80 / 3e-17 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 80 / 3e-17 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.006G201500 [exp] 76 / 3e-17 AT2G35910 122 / 4e-35 RING/U-box superfamily protein (.1) Potri.016G067900 [exp] 76 / 3e-17 AT2G35910 129 / 7e-38 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043426 [exp] 282 / 7e-97 AT4G40070 84 / 5e-19 RING/U-box superfamily protein (.1) Lus10034157 [exp] 277 / 4e-95 AT4G40070 84 / 7e-19 RING/U-box superfamily protein (.1) Lus10015167 [exp] 82 / 2e-18 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10020859 [exp] 81 / 5e-18 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1) Lus10031515 [exp] 81 / 8e-18 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10033515 [exp] 79 / 1e-17 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10014526 [exp] 80 / 2e-17 AT5G40250 423 / 6e-148 RING/U-box superfamily protein (.1) Lus10032161 [exp] 80 / 2e-17 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1) Lus10002194 [exp] 79 / 2e-17 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1) Lus10034953 [exp] 79 / 4e-17 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.010G235200.1 pacid=42799514 polypeptide=Potri.010G235200.1.p locus=Potri.010G235200 ID=Potri.010G235200.1.v4.1 annot-version=v4.1 ATGATGGCTTCAGGGATAAATTTGGTAATGACAGTGATTGGATTTTCTGTAAGCACTATGTTTATAGTTTTTGTTTGCACTCGTCTTATTTGTGCTCGGA TTCAGTTAAATGCATCAAGACGATCTTTTCGTATTGCTTCCAGATCTGATCTTAGCATGTTGGAACGAGGTTTACATGGTCTTGAGCCTGTAGTTATAGC TAGCTTTCCAACCAAGAAGTACAACGATAAGCTTTTCTCGGCTTCAGAAGATGCTCAGTGCACAGTTTGCCTTGCAGAATACCATGGCAAAGATATATTG CGTATTCTCCCCTACTGTGGGCACTCCTTCCACGTGACCTGCATAGACATGTGGTTGCAACAGCATTCTACTTGTCCCATGTGTCGAATATCATTGCGTG AATTTCCCGAGAAGAAGTGCGCGATGCAACCCTTGTTCAGTTCAGCTATCCGTTCTCAATATGGCACAGAGACCTTTGATTCCCATTCTTATAACTATTT GTTGACTGGGCATGGGATTTCACAAAGATCAGACGACAGCCATGGGATGGACACCATTCAAGATAATCTTTGTGCATCTGATGGTGATGAAGCATGTGGG GAGAATTCACCCCCCTTAACCGAGAGTAATCAGATTGCAAAAGACACAGGAGACAAGCATGTAGAAAGCCCGTCAAATCCCTAA
AA sequence Show only first row Show all	>Potri.010G235200.1 pacid=42799514 polypeptide=Potri.010G235200.1.p locus=Potri.010G235200 ID=Potri.010G235200.1.v4.1 annot-version=v4.1 MMASGINLVMTVIGFSVSTMFIVFVCTRLICARIQLNASRRSFRIASRSDLSMLERGLHGLEPVVIASFPTKKYNDKLFSASEDAQCTVCLAEYHGKDIL RILPYCGHSFHVTCIDMWLQQHSTCPMCRISLREFPEKKCAMQPLFSSAIRSQYGTETFDSHSYNYLLTGHGISQRSDDSHGMDTIQDNLCASDGDEACG ENSPPLTESNQIAKDTGDKHVESPSNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20823			RING/U-box superfamily protein...		Potri.010G235200 [exp]	0	1
AT4G24015			RING/U-box superfamily protein...		Potri.001G088400 [exp]	4.24	0.6504
AT3G07340	bHLH	bHLH062	basic helix-loop-helix (bHLH) ...		Potri.014G148900 [exp]	5.19	0.6741
AT4G18820			AAA-type ATPase family protein...		Potri.011G071300 [exp]	6.24	0.7038
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Potri.009G128300 [exp]	13.03	0.6119
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.008G156100 [exp]	13.74	0.6313	TSO1.2
AT4G22730			Leucine-rich repeat protein ki...		Potri.003G115100 [exp]	18.38	0.6891
AT3G05900			neurofilament protein-related ...		Potri.013G001150 [exp]	27.56	0.6375
AT3G44716			unknown protein		Potri.009G148200 [exp]	27.83	0.6509
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Potri.010G103000 [exp]	36.05	0.6244
AT5G58320			Kinase interacting (KIP1-like)...		Potri.019G061600 [exp]	43.39	0.6502

Compare expression of checked genes

Potri.010G235200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.