Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22430 126 / 3e-30 unknown protein AT1G78810 59 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024500 [exp] 1569 / 0 AT3G22430 127 / 1e-30 unknown protein Potri.009G147201 [exp] 233 / 7e-63 AT3G22430 148 / 3e-37 unknown protein Potri.008G152900 [exp] 150 / 3e-38 AT3G22430 409 / 2e-138 unknown protein Potri.010G087400 [exp] 142 / 1e-35 AT3G22430 418 / 3e-142 unknown protein Potri.011G109600 [exp] 47 / 7e-05 AT1G78810 103 / 5e-23 unknown protein Potri.001G037101 [exp] 46 / 0.0001 AT5G23570 334 / 4e-106 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020567 [exp] 226 / 3e-65 AT3G22430 129 / 8e-33 unknown protein Lus10006278 [exp] 228 / 1e-62 AT3G22430 132 / 2e-32 unknown protein Lus10021918 [exp] 104 / 1e-23 AT3G22430 298 / 6e-97 unknown protein Lus10041203 [exp] 61 / 2e-10 AT3G22430 186 / 2e-57 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF03468 [poplar] [flax] XS XS domain
Representative CDS sequence Show only first row Show all	>Potri.010G235700.3 pacid=42797388 polypeptide=Potri.010G235700.3.p locus=Potri.010G235700 ID=Potri.010G235700.3.v4.1 annot-version=v4.1 ATGCAGTCTAGGAAGCCTGAAGATTACATCGCACAGTCTCCATCTGCAAAGACACGTAATCAACATAGAACTGAAGTTGGACATGAGTCTCATCCTGCTC CTCGCCGTCACGCAGTGGATCGGTCTCCACGCGTGCAGCAGCGAAGGAGTTTAAGCCCTCGTAGGAAGGTTGAGGGTACTAGAAAGGTAGTTCATGGGGA GGGAAGGAGCAGCTCGACCGAAAGAAGGGACTCTAGTTGGCATTTGGGTGCAGGTAGGACTGAAAAAGTCCGGTCTGGTTCCCCACAGTACGCCCAAGAG CGTAAAAAACCTCGTTTTGATGAGGGGGTTGTGCATAGGAAATACAGGCAAGTTGAGGAACATGTTGATGGTAAAAGTAATAGATTGAAGCGAGGCTATG GATATGATCATCATGCTGCATCTTCTAGAGCGAGTAAAGAGAAGGATTATCGTGATAACAGGGGCGTGGGTATTGATGGGCATGGCATGATGGGGCAGAA ATCAGTGCCTGAGGAAGATGGTATGATAAGAGGGTCATATCGGGTGCCTCGAGATTTGGTTCCCAACTCAAATTATGGAGATACTGGATCACATATACAG TCAATGTCTCGGAATATGGATAGTGGCCACTTTGATGATGAAGAACTTCAATTTCGAGAGACTATACCATCAGATAAGATTCCGGCCAGGAGATTTTACG AAGAAGGGGAAAAACCTATGTTTCATTCAAGATATGTTCCGTACACCAGGATGTCAGCTCCTCACTCTAAGGATTTGGAAAGCGCTCCTCGATATAAAGA TTTTGCGGGTTCATCTTCTGGATTCTCAAGGAGTGAGTTTCCAGGTTCTTATAGAGAAGGCATGCCCTTAGCTGCTTCAGATGAATATCCAAGGAGCAGC ATAAAACACACAGAACCTACGAATTTTAACACATATAGGGAAAGGTCAGTTATGGACATAAGAGACTATGAGGCTAGTAAGAGAATTATGACAAGTTATC CGCAGGGTGCCTATAATCCTAAAAGGCCCTCGCATGATCATTACTTCTACTCCAAATCACAAGAAATTGTGGATGACAATCATGCATATCCATCTGACGA TGTACACAGAATGATGTCTCCACCTTCTCCATTGAACTATGAGCATGCTCAAACAGATTTTGAGCATAGAGAAATTTCAAGAATGAGTATGCACCATGTT AGAGACAGGACTGATCACACTGATGGTTCCTTTATAAACGTGAGAAGGAGCACTGTATTTGACCATCCCACAATACAAAGGCAAGCACCCATGGAGAACC TTGATACAGGCAGAATACAAAACACATCAAAGCACAATGTGGAATATTTGGGTTCAGCATATACTCAAGTTGATCGTGGACAGGGAGAGTTACAAGATAA TAGGAGATCTCATTCGGGTGTCACACAGGATCGCCAAGTCCCACATTTGAGACCAAATTATGGGTTTGGAAGAGATGCAGGTCCACAGTTTCAAAAGGAA ATATTGCATGATCCTCCTATGCCAATATATGACATGGAAATGAAGAGATTTGCTGCCCAGAGGCAAAGAATGAGGGGAGAGCTTGCCTCGTATGAGCCAC CAGATAAAGCATTCAACCGAAACTATGTAATGGAGGAAGAAATAAATAGGCATGACAGAAAGTACATTGTGGAGGAAGATATAAATAGGCATGATACAAG AAATATTGTGTCAAACAAACGGAATTTACCTCAAGAATTTGAAGATCTTTATGAAAGTGGTGAGGAATGGGTAGATGAAGATACAGGTGCTTTACATGTG TCCAGGACTCGGAGGTTTGACCAGAGTGCATATAGAAATGCTAAAAGGACATACGATAGAGATAATTTTGGAGATTCTGCATCTGAAGACTGGTTGTCTT CTCAAGATTCCTCGGTGCATGCACAAAGGGATTTGATTAGAGATTATAAACCTGGTGCTAAATATATGAAGGGTCATCCGAGATCTGGTCCTTTAAGTTG GTATAACTCACACCAGACTGATAAAAAAAGTGTTCATAGACAGCATAGGATTTGGAAAAGAAATGATGATTATGGCAATGATGCAAATATAAATGATGAT GACCAGCCAGAAGATTGGGTAAATCTCGGGGAGGCTGAACCACGTGAGGGCTCTGAGGAATTCAAGCAACTGGTGGATGAAGCCTTCTTACTGTTTTCAA AAAGATTAAATTTGAACACAGCAGTTCGAAGAAGATACAAGGAGCAAGGAAAAGCTGGTAGTTTGTTCTGCATCGTATGTGGCAAAAGCTCATCAAAGGA GTTCATGGCTGCTCAAAACCTGGTACAGCATGCGTTTATGTCCCACAAGATTGGGCTGAGAGCGCAACACTTGGGTCTTCACAAGGCAATATGTGTTTTG ATGGGGTGGAATAGTTCTGTGCCTTGTGACGCAATAACATGTGCTCCTGAGATCTTGCCTGATGAAGAAGCTTTTGCTCAGAAAGAGGATTTGATGCTCT GGCCTCCACTTGTTGTCATCCACAACATTTCTATGTCAAACAACAACCCAGAACAACAGAAGGTCATACCTATTGAAGGGGTTGAGGCTTTTCTGAGAGG TAAAGGTATTGTTGGGGGTAAAATCAAGGTATGCCTAGGAAAACCTGCCGACCAAAGTGTTATGTTGGTAAAGTTTTTGGGAACTTTTACTGGACTCGGA AATGCAGAGAAGCTTCACAAATATTTTGCAGAGAAGAAACACGGGAGAGAAGAATTTGAGCATAACACATCCAACAACATTAACAACAGCAATAGTTTGG AAGAAGAAACTCAAGGAGGCCAGTTGGAGGAGCACCTACTATACGGGTACCTGGGAATTGCTGAGGACTTGGACAGGCTTGATTTTAATACCAAGAAGAG GATTCTAATAAAGAGCAAGAAGGAAATTCAAGAGCTGGCAAATGCTCCTGTTAAAACTGATGATAAGTCGCTGAATAAATAG
AA sequence Show only first row Show all	>Potri.010G235700.3 pacid=42797388 polypeptide=Potri.010G235700.3.p locus=Potri.010G235700 ID=Potri.010G235700.3.v4.1 annot-version=v4.1 MQSRKPEDYIAQSPSAKTRNQHRTEVGHESHPAPRRHAVDRSPRVQQRRSLSPRRKVEGTRKVVHGEGRSSSTERRDSSWHLGAGRTEKVRSGSPQYAQE RKKPRFDEGVVHRKYRQVEEHVDGKSNRLKRGYGYDHHAASSRASKEKDYRDNRGVGIDGHGMMGQKSVPEEDGMIRGSYRVPRDLVPNSNYGDTGSHIQ SMSRNMDSGHFDDEELQFRETIPSDKIPARRFYEEGEKPMFHSRYVPYTRMSAPHSKDLESAPRYKDFAGSSSGFSRSEFPGSYREGMPLAASDEYPRSS IKHTEPTNFNTYRERSVMDIRDYEASKRIMTSYPQGAYNPKRPSHDHYFYSKSQEIVDDNHAYPSDDVHRMMSPPSPLNYEHAQTDFEHREISRMSMHHV RDRTDHTDGSFINVRRSTVFDHPTIQRQAPMENLDTGRIQNTSKHNVEYLGSAYTQVDRGQGELQDNRRSHSGVTQDRQVPHLRPNYGFGRDAGPQFQKE ILHDPPMPIYDMEMKRFAAQRQRMRGELASYEPPDKAFNRNYVMEEEINRHDRKYIVEEDINRHDTRNIVSNKRNLPQEFEDLYESGEEWVDEDTGALHV SRTRRFDQSAYRNAKRTYDRDNFGDSASEDWLSSQDSSVHAQRDLIRDYKPGAKYMKGHPRSGPLSWYNSHQTDKKSVHRQHRIWKRNDDYGNDANINDD DQPEDWVNLGEAEPREGSEEFKQLVDEAFLLFSKRLNLNTAVRRRYKEQGKAGSLFCIVCGKSSSKEFMAAQNLVQHAFMSHKIGLRAQHLGLHKAICVL MGWNSSVPCDAITCAPEILPDEEAFAQKEDLMLWPPLVVIHNISMSNNNPEQQKVIPIEGVEAFLRGKGIVGGKIKVCLGKPADQSVMLVKFLGTFTGLG NAEKLHKYFAEKKHGREEFEHNTSNNINNSNSLEEETQGGQLEEHLLYGYLGIAEDLDRLDFNTKKRILIKSKKEIQELANAPVKTDDKSLNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22430			unknown protein		Potri.010G235700 [exp]	0	1
AT1G70620			cyclin-related (.1.2.3)		Potri.008G186900 [exp]	2.82	0.8327
AT3G23900			RNA recognition motif (RRM)-co...		Potri.001G319000 [exp]	5.47	0.8280
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.009G085400 [exp]	7.21	0.7688
AT3G23900			RNA recognition motif (RRM)-co...		Potri.017G058300 [exp]	7.41	0.8021
AT3G04160			unknown protein		Potri.019G029400 [exp]	8.12	0.8101
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Potri.003G203100 [exp]	9.38	0.8062
AT4G00060		MEE44	maternal effect embryo arrest ...		Potri.014G066000 [exp]	10.67	0.7961
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.016G064100 [exp]	11.95	0.7738	Pt-UBP12.1
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.010G172100 [exp]	14.42	0.7849
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Potri.013G048100 [exp]	14.49	0.7634

Compare expression of checked genes

Potri.010G235700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.