Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04670 517 / 2e-173 Enhancer of polycomb-like transcription factor protein (.1) AT4G32620 161 / 2e-40 Enhancer of polycomb-like transcription factor protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024300 [exp] 1192 / 0 AT5G04670 488 / 3e-162 Enhancer of polycomb-like transcription factor protein (.1) Potri.006G246200 [exp] 168 / 1e-42 AT4G32620 1021 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Potri.018G034900 [exp] 161 / 2e-40 AT4G32620 613 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Potri.014G000600 [exp] 52 / 1e-06 AT1G79020 561 / 0.0 Enhancer of polycomb-like transcription factor protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028841 [exp] 607 / 0 AT1G66950 1374 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10008985 [exp] 402 / 3e-128 AT5G04670 325 / 2e-99 Enhancer of polycomb-like transcription factor protein (.1) Lus10041252 [exp] 166 / 5e-42 AT4G32620 923 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Lus10021959 [exp] 148 / 3e-36 AT4G32620 870 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Lus10033318 [exp] 57 / 4e-08 AT1G79020 586 / 0.0 Enhancer of polycomb-like transcription factor protein (.1) Lus10034778 [exp] 57 / 5e-08 AT1G79020 577 / 0.0 Enhancer of polycomb-like transcription factor protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10513 [poplar] [flax] EPL1 Enhancer of polycomb-like
Representative CDS sequence Show only first row Show all	>Potri.010G235900.1 pacid=42800305 polypeptide=Potri.010G235900.1.p locus=Potri.010G235900 ID=Potri.010G235900.1.v4.1 annot-version=v4.1 ATGCCGTCGGTGGGGTTGCGGAGGACGACGAGGGTGTTTGGGGTAATTAAGGGAGTTGATGGGGCTCGGGTGTTGAGGTCTGGGCGGCGTTTATGGCAGG AATCTGGTGATGGCAAGCTCAGGAGAAGCAATGATGGCGACGAGTGGTACCACACTATAATCAAGAACGACAACTATCAGACGAAGAATCAAAATAAAAA TAGTGATCTGAAGTACAAGGAGAATAGTGGGTGGGCCCATGACGATAAACTGAAGAAAGATCTTGGTGTTGTTATTGCCATTGCAGCGCCTAAGAGAATT AAGAGGGTTAAGAGTGAGAAGAAGTTTGGGATTGTTTATAGGAGGAAAAGGAAGAGACTTGGTGGTGAAAAGAGTGAAGATTCGGAGGATAAGAAGTTTG GGATTCAGTTTTCACGTAGGCAGCGAAGGAGTCTGGATGATGAGAGTTCGGAGAGTCTTGTGTGTACTCCTGAGCTTGTTGTTTTAGTTGAGGATTTTAG TTCTAGTAGTAGTAATGGGTTGTCTTGTTTTTTGAGTTCGGTTTTGAGGTATATTAAGAGGGTCAATTTGAGCCTTTCTGAACTTGCTGATTTTCTCTTG TCGGAGCCAATCAGCAGTGTTTTTGCCTCGAATGGACTTCATTTTGCGCGGGATCTTTCCGCTGATAGAATTGGAATTTGCAAGTTTTTTGGGACCAGGC AGCTTCTGCCAATGTTTTCTGTGGATTTTTCTTCAATTCCTTCGTGTTTTGTGCACATGCATCTCAGTTTGTTTGTTAGGTTTAAATTTCTGTCTCCCAT ACCTGTAAATAACTCGTTGGATGAGGATGATGAGGATGATGATGTAATGATGAGCGGAAGTAAAGTAGATCAATCATGCACGACCATGAAAACAGATTTT GCTCTGAAAATTACAGCTGTGCCTGAAATTGATAATTCTGGGAGTAAGGCAGTTGTACATCCATCTGTTAGAGCTTCCAAGTTAGCTGGTCGAAGCACCC AGTACAGAAATGGATTAAATTCCCGTGGTATTCAGAAAAGAAGGAGCTCACTCAGGAGAGGGAGACCTAGAAATTCTGCCATAGCTGGCCTGCACAAAGC TAGCGGTGCTTTGGTTTCTGATTTGATTAGTAGTAGAAGAAAAGGTATACCTTTCTCTTCTGTTGTGTCTAAGAACAAACTTAGAAGGTCAGTTCGAAGT AGCCCTGCAGCAAACATCAAAGAGATGAATTCTGCTGCAGTTGGAGTGAAGAAGGACATGAATATGTCTAGCTGCTCTGCAAATATACTGGTTTCCGAAT CAGACAGATGTTACAGGATAGAAGGGGCCACTGTCATGTTTGAATTCACTGGTTCAAGGGAGTGGGTGCTTGTGGTGAAGAAAGATGGGTTAACCCGATA CACCCATCTGGCACAGAAAAGTATGAGGACTTGTGCTTCCAACCGTTTCACTCATGATATAATTTGGACTGGGGATGACAATTGGAAGCTAGAATTCCCT AACCGACAGGACTGGTTCATTTTCAAGGAATTGTACAAGGAATGCTCTGATTGCAATGTTCCGGCTTCTGTTTCCAAGGTCATTTCTGTGCCTGGAGTAC GAGAAGTGTTAGGCTATGAGAATGGTGGCGGTGCTCCCTTTTTAAGACCATATGCTTACATCTCTTCTGAAAATGATGAGGTAGCTAGAGCTTTGGCGAG GAGCACTGCAAGTTATGACATGGATTCTGAAGATGAGGAATGGCTTAAGAAGTATAATAATGACTTTTTAGCAGAATCTGATCATCTTTCAGAGGATAAC TTTGAGTTATTGATTGATGCTCTTGAGAAGTCATATTACTGCAATCCAGATGACTTCACTGATGAGAATGCAGCAGCAAAATACTGTAAGGATTTTGGTA GGAGGGAAGTGGCTGAAGCTGTGTACAGTTACTGGATGAAAAAACGGAAACAGAAATGTTCACCGTTGCTCCGAGTTTTCCAGGGGCATCAAGCTAAGAA AACCCCAGTGATTCCAAAACCTGTTCTGCGTAAGAGAAGGTCATTCAAACGACCTCCCAGTCAATTTGGAAGAGGCAAACAACCAAGTCTATTGCCAGTA ATGGCTGCTGATCAAGATGCTTTGGAAGGATATAATGCCATGCATAAAATCGAAGAAGCTGAAAACTCAGTGAAGAGATCTTTGGAAGCTGCCATCCTCA AGCGTAGAAGGGCTCAGTTGCTCATGAAGAATGCAGATTTGGCAACCTATAAAGCTGCAATGGCACTTAAAATTGCTGAAGCTGCTCTTGTTGCCAGTTC AACTGATGTTGCTGTCACCCAATTGTGTGATTGA
AA sequence Show only first row Show all	>Potri.010G235900.1 pacid=42800305 polypeptide=Potri.010G235900.1.p locus=Potri.010G235900 ID=Potri.010G235900.1.v4.1 annot-version=v4.1 MPSVGLRRTTRVFGVIKGVDGARVLRSGRRLWQESGDGKLRRSNDGDEWYHTIIKNDNYQTKNQNKNSDLKYKENSGWAHDDKLKKDLGVVIAIAAPKRI KRVKSEKKFGIVYRRKRKRLGGEKSEDSEDKKFGIQFSRRQRRSLDDESSESLVCTPELVVLVEDFSSSSSNGLSCFLSSVLRYIKRVNLSLSELADFLL SEPISSVFASNGLHFARDLSADRIGICKFFGTRQLLPMFSVDFSSIPSCFVHMHLSLFVRFKFLSPIPVNNSLDEDDEDDDVMMSGSKVDQSCTTMKTDF ALKITAVPEIDNSGSKAVVHPSVRASKLAGRSTQYRNGLNSRGIQKRRSSLRRGRPRNSAIAGLHKASGALVSDLISSRRKGIPFSSVVSKNKLRRSVRS SPAANIKEMNSAAVGVKKDMNMSSCSANILVSESDRCYRIEGATVMFEFTGSREWVLVVKKDGLTRYTHLAQKSMRTCASNRFTHDIIWTGDDNWKLEFP NRQDWFIFKELYKECSDCNVPASVSKVISVPGVREVLGYENGGGAPFLRPYAYISSENDEVARALARSTASYDMDSEDEEWLKKYNNDFLAESDHLSEDN FELLIDALEKSYYCNPDDFTDENAAAKYCKDFGRREVAEAVYSYWMKKRKQKCSPLLRVFQGHQAKKTPVIPKPVLRKRRSFKRPPSQFGRGKQPSLLPV MAADQDALEGYNAMHKIEEAENSVKRSLEAAILKRRRAQLLMKNADLATYKAAMALKIAEAALVASSTDVAVTQLCD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04670			Enhancer of polycomb-like tran...		Potri.010G235900 [exp]	0	1
AT1G04300			TRAF-like superfamily protein ...		Potri.010G075000 [exp]	5.00	0.8127
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.014G114900 [exp]	6.92	0.7590
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Potri.010G213300 [exp]	7.14	0.8027
AT1G52520	FAR1_related	FRS6	FAR1-related sequence 6 (.1)		Potri.003G031400 [exp]	8.71	0.7971
AT3G03440			ARM repeat superfamily protein...		Potri.017G128100 [exp]	8.83	0.7779
AT2G27950			Ring/U-Box superfamily protein...		Potri.009G003500 [exp]	9.48	0.7674
AT4G17080			Histone H3 K4-specific methylt...		Potri.002G140000 [exp]	16.37	0.8053
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.006G085600 [exp]	19.59	0.7448	MYB211,Pt-MYB3.1
AT1G20110			RING/FYVE/PHD zinc finger supe...		Potri.002G018900 [exp]	20.66	0.7755
AT5G58020			unknown protein		Potri.006G186900 [exp]	23.32	0.7559

Compare expression of checked genes

Potri.010G235900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.