Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44610 498 / 4e-175 Protein kinase superfamily protein (.1) AT5G47750 402 / 2e-135 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT5G40030 392 / 7e-133 Protein kinase superfamily protein (.1) AT3G12690 393 / 5e-132 AGC1.5 AGC kinase 1.5 (.1.2.3) AT4G26610 390 / 6e-132 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 387 / 7e-131 D6PK D6 protein kinase (.1) AT1G79250 388 / 2e-130 AGC1.7 AGC kinase 1.7 (.1.2) AT2G44830 392 / 3e-129 Protein kinase superfamily protein (.1) AT3G27580 383 / 5e-128 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT5G03640 389 / 2e-126 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024000 [exp] 741 / 0 AT3G44610 487 / 1e-170 Protein kinase superfamily protein (.1) Potri.004G186200 [exp] 536 / 0 AT3G44610 548 / 0.0 Protein kinase superfamily protein (.1) Potri.009G146500 [exp] 535 / 0 AT3G44610 548 / 0.0 Protein kinase superfamily protein (.1) Potri.006G003800 [exp] 406 / 8e-137 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.016G004900 [exp] 406 / 1e-136 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G114900 [exp] 408 / 2e-133 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.002G137700 [exp] 402 / 2e-133 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.014G047500 [exp] 400 / 4e-133 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 393 / 7e-133 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043435 [exp] 548 / 0 AT3G44610 466 / 2e-162 Protein kinase superfamily protein (.1) Lus10020572 [exp] 535 / 0 AT3G44610 585 / 0.0 Protein kinase superfamily protein (.1) Lus10006272 [exp] 534 / 0 AT3G44610 591 / 0.0 Protein kinase superfamily protein (.1) Lus10016629 [exp] 399 / 3e-134 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10042911 [exp] 395 / 1e-133 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10038753 [exp] 397 / 2e-133 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 396 / 4e-133 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10008634 [exp] 391 / 2e-127 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10035591 [exp] 390 / 3e-127 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1) Lus10020571 [exp] 385 / 3e-127 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.010G236200.5 pacid=42799804 polypeptide=Potri.010G236200.5.p locus=Potri.010G236200 ID=Potri.010G236200.5.v4.1 annot-version=v4.1 ATGACCACCACGGCGGCCTCCACCATGGAACCAAGCGCGGAAGATCTAACCGATGATCTTGATAATCTTAGTTTCACTTCCACCACCACTGCTGTTGAGA CAAGACACAGCACAAGTTCAGGGTCCGAAACCACGTGGACTACCTCAACCTCGAGCCTCATGTCAAACTCCTGCAAGCCCCATCATCCACCCCAATGTGA TGAATGCTGGCATGCAATTCAACGTGAAAACTGCGGTAACTCACCCTTAACCCTAGCTGATTTACGCTTTGTCCACAAATTAGGAAGTGGTGACATAGGG AGTGTGTATCTTGTAGTGCTCAAGGAAGGCAATGAGTGTCTTTTTGCTGCCAAAGTCATGGACAAAAAAGAAATGGCTACTAGGAACAAAGACAGTAGGG CTAGAATCGAGAGGGAGATATTGGAAATGTTGGAGCACCCATTTTTGCCTCCATTGTATGCCACACTGGACTCACCTAGGTGGTCGTGTTTGCTAACGGA GTTTTGTCCTGGTGGTGACCTCCATGTCCTCCGGCAAAGGCAACCGGATAGACGTTTCGATGAAGCTGCCGTCCGGTTTTATGCATCAGAAGTTGTGGCT GCACTTGAATACCTACACATGATGGGAATCGTCTATCGTGACATCAAGCCTGAAAATGTTCTTATAAGATCAGACGGTCACATAATGCTTACAGATTTTG ATCTCTCCTTAAAAGATGACAACTCAACATCAACAGCTCAGATTATTTCTGATCAAAACCCACCAATCACATCATCGACAAGTGATTACCCCTCTGATAC ATCTCAGTTTGCCACATCATCATGCATTCTGCCCAATTGCATTGTGCCAGCTGTCTCTTGCCTCCAACCATGTAGAAAACGCAAGAAGAAATTCAATCAA CGTGGGACCCTCGAGATTGTAGCAGAGCCAATAGACGTCCGGTCCATGTCATTCGTTGGGACCCACGAGTACTTGGCACCTGAGATCGTTTCCGGCGAGG GACACGGCAGTGCAGTGGATTGGTGGACCTTAGGCATATTCATATTTGAAATGTTCTATGGTGTTACGCCGTTTAAAGGGACGGACCATGAGTTAACCCT GGCTAATGTCGTGGCTCGAGCCCTTGAGTTCCCCAAGGAACCATCGGTCCCAGTCTTCGCCAAGGATTTGATCACACAACTTCTCATCAAGGATCCTACA AGACGACTGGGCTCTACAATGGGAGCTACTGCGATTAAGCATCATCATTTTTTTGAAGAGATAAATTGGGCATTGTTAAGGTGTAAAACTCCACCTTATA TCCCTCAGCCATTCACTTATAAAAACTTCATTGCCACCAATCATGGGAACAATTCTATAGAACATTATTAG
AA sequence Show only first row Show all	>Potri.010G236200.5 pacid=42799804 polypeptide=Potri.010G236200.5.p locus=Potri.010G236200 ID=Potri.010G236200.5.v4.1 annot-version=v4.1 MTTTAASTMEPSAEDLTDDLDNLSFTSTTTAVETRHSTSSGSETTWTTSTSSLMSNSCKPHHPPQCDECWHAIQRENCGNSPLTLADLRFVHKLGSGDIG SVYLVVLKEGNECLFAAKVMDKKEMATRNKDSRARIEREILEMLEHPFLPPLYATLDSPRWSCLLTEFCPGGDLHVLRQRQPDRRFDEAAVRFYASEVVA ALEYLHMMGIVYRDIKPENVLIRSDGHIMLTDFDLSLKDDNSTSTAQIISDQNPPITSSTSDYPSDTSQFATSSCILPNCIVPAVSCLQPCRKRKKKFNQ RGTLEIVAEPIDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFIFEMFYGVTPFKGTDHELTLANVVARALEFPKEPSVPVFAKDLITQLLIKDPT RRLGSTMGATAIKHHHFFEEINWALLRCKTPPYIPQPFTYKNFIATNHGNNSIEHY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44610			Protein kinase superfamily pro...		Potri.010G236200 [exp]	0	1
AT5G66920		SKS17	SKU5 similar 17 (.1)		Potri.007G038300 [exp]	1.41	0.9686
AT3G44610			Protein kinase superfamily pro...		Potri.008G024000 [exp]	1.73	0.9587
AT1G04040			HAD superfamily, subfamily III...		Potri.002G257700 [exp]	2.00	0.9655
AT5G01890			Leucine-rich receptor-like pro...		Potri.006G108600 [exp]	3.16	0.9538
AT5G06940			Leucine-rich repeat receptor-l...		Potri.016G051600 [exp]	3.16	0.9434
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.005G237900 [exp]	3.46	0.9587
AT5G59840			Ras-related small GTP-binding ...		Potri.001G236100 [exp]	3.60	0.9397	Pt-RAB8.2
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.013G001000 [exp]	4.24	0.9442
AT5G43420			RING/U-box superfamily protein...		Potri.010G072700 [exp]	4.35	0.9318
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Potri.009G055900 [exp]	4.69	0.9423

Compare expression of checked genes

Potri.010G236200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.