Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27690 576 / 0 CYP94C1 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) AT3G48520 412 / 1e-139 CYP94B3 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) AT5G63450 393 / 2e-132 CYP94B1 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) AT3G01900 385 / 3e-129 CYP94B2 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) AT1G34540 381 / 9e-128 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT3G56630 379 / 7e-127 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT5G23190 340 / 6e-111 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 318 / 1e-103 Cytochrome P450 superfamily protein (.1) AT1G63710 311 / 2e-100 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT1G13140 309 / 2e-99 CYP86C3 "cytochrome P450, family 86, subfamily C, polypeptide 3", cytochrome P450, family 86, subfamily C, polypeptide 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G145400 [exp] 654 / 0 AT2G27690 622 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.004G185300 [exp] 639 / 0 AT2G27690 604 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.013G075600 [exp] 639 / 0 AT2G27690 585 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.012G096800 [exp] 428 / 6e-146 AT3G48520 611 / 0.0 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.016G031700 [exp] 419 / 2e-142 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.001G331100 [exp] 402 / 9e-136 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Potri.002G042100 [exp] 401 / 2e-135 AT3G48520 451 / 1e-154 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220900 [exp] 399 / 9e-135 AT3G48520 414 / 2e-140 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220700 [exp] 396 / 1e-133 AT3G48520 436 / 4e-149 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014741 [exp] 403 / 4e-136 AT5G63450 461 / 1e-158 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014742 [exp] 399 / 9e-135 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033853 [exp] 392 / 6e-132 AT5G63450 474 / 7e-164 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10041562 [exp] 390 / 6e-131 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10012531 [exp] 385 / 5e-129 AT3G01900 592 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10033852 [exp] 349 / 6e-115 AT5G63450 457 / 4e-157 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10036024 [exp] 335 / 1e-109 AT3G56630 380 / 3e-127 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Lus10043378 [exp] 325 / 5e-109 AT2G27690 341 / 1e-115 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Lus10010193 [exp] 334 / 9e-109 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 334 / 1e-108 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.010G236700.1 pacid=42798871 polypeptide=Potri.010G236700.1.p locus=Potri.010G236700 ID=Potri.010G236700.1.v4.1 annot-version=v4.1 ATGGAGTCTAAAGATTCTTTGCAGGCTACTTTTTGGTATTCCTTTTTCTTTCTCACCATCCCCTTCTTTCTAACCTTTGTGCTGCTGTATCTTCTAAGAT CAAAATTCCGGTGCTGCAACTGTGAAATTTGCACTAATTACCTCTTATCAGGATGGTCAAGAGAGTTCAAGAATATCTGTGATTGGTACACTCACCTTCT CCAAAATTCTTCCAGACAAACGATTCACATTCATGTGCTTGGCAACACAATCACTGCAAATCCTGACAATGTTGAGTACATTCTGAAAACAAAATTCGAA AACTACCCAAAAGGCAGGCCCTTTTCTATGATCCTTGGTGATTTTCTAGGTAAAGGTATTTTCAATGTAGATGGAGATTTGTGGCTGTTTCAAAGAAAAA TGGCTAGTCTAGAGCTTGCAAGCGTCTCGATTCGAAACTATGCATTTGAGATTGTCGACACTGAGATCAAGTGCCGCCTTCTCCCTCTGTTGACATCAGC TGCTAAGAGTACAGATGGTGGCCTAATAGATTTACAAGATGTTTTCAGACGATTTTCGTTCGATAACAATTGTAAATTTTCTTTCGGGTTAGACCCCGGT TGTCTTGAATCATCATTGCCGATTTCTGTTTTCGCTGAGTCCTTCGATCTTGCATCGAAGTTGTCAGCAGAGAGGGCTATGGCAACATTGCCGTTAGTTT GGAAGATCAAAAGGTATTTCAACATAGGCACAGAGAAGAATCTCAAGGAAGCTATTGAGGTTGTCAACATTCTTGCTGATGAGGTCATCATGCAGAAAAG GAAGTTAGGTTTCTCTACAAATCAAGATCTTCTATCAAGATTCATGGCTTGCATTACTGATGATCGATACTTGAGAGACATCGTGATAAGCTTTATTTTG GCAGGCCGTGACACAATGGCCTCAGCCCTGACAACACTCTTCTGGCTGCTAGCAAGCCACCCAAATGTTGTGTCCATGATTAGAGAGGAGTCGAACCGAG TCATGGCATCAAATCAAGAATCAGCAAGCTATGAACAAATAAGGGAAATGCATTATCTCCACGCGGTTGTTAATGAAAGCCTGAGATTATACCCGCCAGT GCAATTTGACTCAAAATTTGCCATGGAAGATGATGTTTTGCCTGATGGGACTCTTGTTAGGAGGGGGACTAGGGTCACTTACCATCCTTACGCAATGGGT CGAATGGAAAGGATTTGGGGCATAGATTGTATGGAATTTAGGCCAGAAAGGTGGCTTGAAAATGGAACATTTTGCCCAATTAGTCCATTCAAGTGCCCAG TTTTCCAGGCTGGGATTAGAGTTTGCTTGGGTAAGGAAATGTCACTTGTGGAGATGAAAATTGTAGCTCTTTCTGTAGTGCGTAGGTTTGACGTTAAAAT TGTACCGCCGGAGGTTTCACCCCGGTTCAATTCCGGGCTAACTGCAATGCTAAGTGGTGGGCTTCAGGCAGAAATTAGAGAAAGGGTCATTGCAGCATGA
AA sequence Show only first row Show all	>Potri.010G236700.1 pacid=42798871 polypeptide=Potri.010G236700.1.p locus=Potri.010G236700 ID=Potri.010G236700.1.v4.1 annot-version=v4.1 MESKDSLQATFWYSFFFLTIPFFLTFVLLYLLRSKFRCCNCEICTNYLLSGWSREFKNICDWYTHLLQNSSRQTIHIHVLGNTITANPDNVEYILKTKFE NYPKGRPFSMILGDFLGKGIFNVDGDLWLFQRKMASLELASVSIRNYAFEIVDTEIKCRLLPLLTSAAKSTDGGLIDLQDVFRRFSFDNNCKFSFGLDPG CLESSLPISVFAESFDLASKLSAERAMATLPLVWKIKRYFNIGTEKNLKEAIEVVNILADEVIMQKRKLGFSTNQDLLSRFMACITDDRYLRDIVISFIL AGRDTMASALTTLFWLLASHPNVVSMIREESNRVMASNQESASYEQIREMHYLHAVVNESLRLYPPVQFDSKFAMEDDVLPDGTLVRRGTRVTYHPYAMG RMERIWGIDCMEFRPERWLENGTFCPISPFKCPVFQAGIRVCLGKEMSLVEMKIVALSVVRRFDVKIVPPEVSPRFNSGLTAMLSGGLQAEIRERVIAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Potri.010G236700 [exp]	0	1
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.012G109600 [exp]	1.73	0.9344
AT5G64570		ATBXL4, XYL4	ARABIDOPSIS THALIANA BETA-D-XY...		Potri.001G206800 [exp]	4.47	0.8742	XYL4.2
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.001G121700 [exp]	4.69	0.8919
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.004G113500 [exp]	6.48	0.8739
AT1G43130		LCV2	like COV 2 (.1)		Potri.005G148000 [exp]	8.94	0.8564
AT5G23870			Pectinacetylesterase family pr...		Potri.012G142300 [exp]	9.79	0.8663
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Potri.016G110600 [exp]	10.39	0.8164	Pt-DET2.1
AT2G40280			S-adenosyl-L-methionine-depend...		Potri.010G185000 [exp]	10.53	0.8897
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.012G109200 [exp]	14.24	0.8735
AT2G47480			Protein of unknown function (D...		Potri.013G010600 [exp]	14.38	0.8539

Compare expression of checked genes

Potri.010G236700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.