Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03610 256 / 5e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G09930 241 / 3e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G36325 224 / 1e-70 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03600 178 / 2e-53 SGNH hydrolase-type esterase superfamily protein (.1) AT2G40250 122 / 1e-31 SGNH hydrolase-type esterase superfamily protein (.1) AT2G31540 113 / 2e-28 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G30310 109 / 5e-27 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G03980 109 / 5e-27 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58430 109 / 6e-27 RXF26 GDSL-like Lipase/Acylhydrolase family protein (.1) AT1G75920 107 / 2e-26 EXL5 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G236951 [exp] 574 / 0 AT5G03610 244 / 2e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G237000 [exp] 285 / 1e-94 AT5G03610 352 / 1e-120 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G406500 [exp] 256 / 5e-83 AT5G03610 425 / 3e-149 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G053100 [exp] 230 / 2e-73 AT5G03610 205 / 3e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G230100 [exp] 171 / 2e-51 AT5G03610 164 / 2e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G127100 [exp] 116 / 9e-30 AT1G71120 479 / 9e-171 GDSL-motif lipase/hydrolase 6 (.1) Potri.002G018800 [exp] 108 / 2e-26 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 104 / 2e-25 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.005G242800 [exp] 104 / 2e-25 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003253 [exp] 247 / 1e-79 AT5G03610 397 / 2e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10035600 [exp] 241 / 3e-77 AT5G03610 397 / 7e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028145 [exp] 233 / 2e-74 AT5G03610 234 / 2e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10042849 [exp] 235 / 3e-71 AT5G03610 240 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10043441 [exp] 179 / 6e-55 AT5G03610 201 / 1e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034139 [exp] 153 / 4e-44 AT5G03610 187 / 4e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041877 [exp] 112 / 3e-28 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028423 [exp] 109 / 4e-27 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026074 [exp] 109 / 8e-27 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002389 [exp] 108 / 1e-26 AT3G48460 145 / 3e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.010G236800.1 pacid=42798125 polypeptide=Potri.010G236800.1.p locus=Potri.010G236800 ID=Potri.010G236800.1.v4.1 annot-version=v4.1 ATGGAGGGAAAAGGAATTTTCCTGGTTGTTCTGCTTCTTTTTTCCCTCGTTGCTATTTCCACAGCTCAAATTTGTCCCTACGGCTCTCCAAAACTATTTG TTTTTGGAGACTCCTATGTTGATACTGGAAATTGGCCAAAGAATGACAGGGGTCCATGGAAAGAACCTTTTGGCAAAACATTTCCCGGCATACCAACTGG TCGAGCCTCCGATGGTCGTGTCCTAACTGACCATATAGCTTCGTTTCTGGGAATAGAATCACCTACACCTTACCAACTGAGAGATACATCAAAAAATATT CAGCAAGGATTAAACTTTGCATATGGAGGCAGTGGTGTTTTCCCTTCAACATGGGCGAAAGACAGCCTTTCAGTCCAGATCGATCAATTTGAACAGCTAC TCGATGAAAATGAATATAGTCAACGTGACCTTGATAATTCAGTTGCTCTGGTTTCTACTGGAGGCAATGACTATTCATTGTATTCTGCGGCCAAAAAAGG TTCCAACGATGGACTGCCTGCTTTCACTGAAGGACTTGTTCGCCAGCTTGCTGCAGACTTACAACGTATTGCTCACCTTGGAGTGAAAAAAATTGTAGTG GCAACATTACCACTTCTAGGATGCTTGCCCGTACACATAATTCCACCAAATTCATATCAGAATTGCGATGAAGAATCCAACAAAAACGCCATGATTCACA ACCAGCTATTGCAGAAAGCAGTAGAAAAGTTGAAAACTGATGATGGAAACAAATGCACATTTGTAATTCTTGATCTCTATAACGCTATGGTTTCTGCAAT TGACCAATTCAGACAGAATGCAGCAAATTCTGAGTACAAGAACCCCTTGCAGCCATGTTGCTCCAAGATTGTTGATTACATGTGCTCAGTGGAAGGAGTA TGCACGAATCCCGAGTCATCTTTCTTTTTTGATCTGGGACACCCTTCGGACAATGGCTGGAATGCTATTTTTTCATTTCTGCAAGGTTCTCTTCACAAAG ATCTAAAAGTTTGA
AA sequence Show only first row Show all	>Potri.010G236800.1 pacid=42798125 polypeptide=Potri.010G236800.1.p locus=Potri.010G236800 ID=Potri.010G236800.1.v4.1 annot-version=v4.1 MEGKGIFLVVLLLFSLVAISTAQICPYGSPKLFVFGDSYVDTGNWPKNDRGPWKEPFGKTFPGIPTGRASDGRVLTDHIASFLGIESPTPYQLRDTSKNI QQGLNFAYGGSGVFPSTWAKDSLSVQIDQFEQLLDENEYSQRDLDNSVALVSTGGNDYSLYSAAKKGSNDGLPAFTEGLVRQLAADLQRIAHLGVKKIVV ATLPLLGCLPVHIIPPNSYQNCDEESNKNAMIHNQLLQKAVEKLKTDDGNKCTFVILDLYNAMVSAIDQFRQNAANSEYKNPLQPCCSKIVDYMCSVEGV CTNPESSFFFDLGHPSDNGWNAIFSFLQGSLHKDLKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Potri.010G236800 [exp]	0	1
					Potri.005G129050 [exp]	1.73	0.9589
AT5G24090		ATCHIA	chitinase A (.1)		Potri.012G033866 [exp]	4.12	0.9652
AT1G16260			Wall-associated kinase family ...		Potri.001G040628 [exp]	8.00	0.9574
AT5G24090		ATCHIA	chitinase A (.1)		Potri.012G033899 [exp]	11.74	0.9436
AT1G17860			Kunitz family trypsin and prot...		Potri.001G309900 [exp]	20.00	0.9602
AT1G78780			pathogenesis-related family pr...		Potri.005G188400 [exp]	20.61	0.9573	Pt-PR.3
AT5G24090		ATCHIA	chitinase A (.1)		Potri.015G024150 [exp]	22.24	0.9437
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G213100 [exp]	32.03	0.9573
AT5G24090		ATCHIA	chitinase A (.1)		Potri.015G023900 [exp]	36.16	0.9214	CHI3.7
AT1G27100			Actin cross-linking protein (....		Potri.017G075900 [exp]	41.15	0.9542

Compare expression of checked genes

Potri.010G236800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.