Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03610 244 / 1e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G09930 238 / 2e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G36325 210 / 2e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03600 181 / 1e-54 SGNH hydrolase-type esterase superfamily protein (.1) AT2G40250 115 / 3e-29 SGNH hydrolase-type esterase superfamily protein (.1) AT5G03590 106 / 7e-27 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G03980 106 / 5e-26 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G53920 106 / 1e-25 GLIP5 GDSL-motif lipase 5 (.1) AT1G71120 102 / 1e-24 GLIP6 GDSL-motif lipase/hydrolase 6 (.1) AT2G31540 101 / 3e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G236800 [exp] 562 / 0 AT5G03610 255 / 5e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G237000 [exp] 275 / 1e-90 AT5G03610 352 / 1e-120 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G406500 [exp] 247 / 1e-79 AT5G03610 425 / 3e-149 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G053100 [exp] 203 / 6e-63 AT5G03610 205 / 3e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G230100 [exp] 159 / 1e-46 AT5G03610 164 / 2e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G127100 [exp] 120 / 6e-31 AT1G71120 479 / 9e-171 GDSL-motif lipase/hydrolase 6 (.1) Potri.013G153000 [exp] 115 / 2e-29 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.002G018800 [exp] 106 / 8e-26 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G112700 [exp] 100 / 7e-24 AT5G15720 249 / 7e-80 GDSL-motif lipase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003253 [exp] 233 / 3e-74 AT5G03610 397 / 2e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10035600 [exp] 228 / 3e-72 AT5G03610 397 / 7e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028145 [exp] 209 / 3e-65 AT5G03610 234 / 2e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10042849 [exp] 209 / 2e-61 AT5G03610 240 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10043441 [exp] 167 / 2e-50 AT5G03610 201 / 1e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034139 [exp] 139 / 1e-38 AT5G03610 187 / 4e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041877 [exp] 112 / 4e-28 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028423 [exp] 112 / 5e-28 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028425 [exp] 112 / 6e-27 AT1G75900 333 / 8e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028424 [exp] 107 / 2e-26 AT3G14820 298 / 2e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.010G236951.1 pacid=42799340 polypeptide=Potri.010G236951.1.p locus=Potri.010G236951 ID=Potri.010G236951.1.v4.1 annot-version=v4.1 ATGGAGGGGAAAGGAATCTTCTTGGTTGGTTTGCTTCTTTTATCCATCGCTGATATTTCTACAGCTCAAAATTGTCCCAAGGGCTCTCCAAAACTCTTTG TTTTTGGAGACTCCTATGTTGATACTGGAAATTGGCCAAAGAATGTCAGGGGTCCATGGAAAGAACCTTTTGGTAAAACATTTCCTGGTAAACCAAATGG TCGAGCCTCCGATGGTCGTGTCCTTACTGACCATATAGCATCATTTCTGGGAATAGAATCACCTACCCCTTATCAACTGAGAGATACATCAAAAAGTATT CAGCAAGGATTAAACTTTGCATATGGAGGCAGTGGTGTTTTCCCCACATGGGCGAAAGACAGTCTGACAGTCCAGATCGATCAGTTTGAACAGCTACTCA AAGAAAATGTATGCAGTCAATGTGACCTTGATAGTTCAGTTGCCCTGGTTTCTACTGGAATCAATGACTATTCATTCTATTCTGCAGCCAAAAAAGGTTC CAACGATGGACTGCCTGCTTTCACTGAAGGACTTGTCAACCAGCTCGCTGCAGACCTACAACGTATTAATCGTCTAGGAGTGAAAAAAGTTGTAGTAGCA ACATTACCAGTTGTAGGATGCTTGCCTCTCCACATAATTCCACCAAATTCATATCAGAAGTGCGATGAAGAATCCAACAAGAACGCCAAGATTCACAACC AGGCATTGCAGAAAGCAGTGGAAAAAATGAACACTGATGATGGAAACAAAAGCACGTTTGTAATTCTTGATCTCTATAACGCTATGGTTTCTGCTATTGA CCAATTCAGACAGGATGCAGCAAATACCGAGCACAAGAACCCATTGCAGCCATGTTGCTCGAAGACTGTTGAGCACATATGCTCAGCGGAAGGACTGTGC TCGAATCCCAAGTCATCTTTCTTTTTCGATCTGGCACACCCTTCGGACAATGGCTGGAATGCAATTTATTCATTTCTTCAAGGTTCTCTTAACAATGATC TAACAGCTTGA
AA sequence Show only first row Show all	>Potri.010G236951.1 pacid=42799340 polypeptide=Potri.010G236951.1.p locus=Potri.010G236951 ID=Potri.010G236951.1.v4.1 annot-version=v4.1 MEGKGIFLVGLLLLSIADISTAQNCPKGSPKLFVFGDSYVDTGNWPKNVRGPWKEPFGKTFPGKPNGRASDGRVLTDHIASFLGIESPTPYQLRDTSKSI QQGLNFAYGGSGVFPTWAKDSLTVQIDQFEQLLKENVCSQCDLDSSVALVSTGINDYSFYSAAKKGSNDGLPAFTEGLVNQLAADLQRINRLGVKKVVVA TLPVVGCLPLHIIPPNSYQKCDEESNKNAKIHNQALQKAVEKMNTDDGNKSTFVILDLYNAMVSAIDQFRQDAANTEHKNPLQPCCSKTVEHICSAEGLC SNPKSSFFFDLAHPSDNGWNAIYSFLQGSLNNDLTA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Potri.010G236951 [exp]	0	1
AT5G15110			Pectate lyase family protein (...		Potri.004G124100 [exp]	4.00	0.8636
					Potri.001G031200 [exp]	12.12	0.8364
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Potri.015G101400 [exp]	14.24	0.8682
AT5G27660			Trypsin family protein with PD...		Potri.018G001500 [exp]	24.31	0.8498
					Potri.004G183032 [exp]	28.91	0.7726
AT2G20875		EPF1	epidermal patterning factor 1 ...		Potri.013G136100 [exp]	31.49	0.8491
					Potri.002G098050 [exp]	46.86	0.8313
					Potri.001G060750 [exp]	52.24	0.8169
AT3G50940			P-loop containing nucleoside t...		Potri.005G115200 [exp]	53.47	0.7189
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Potri.011G075900 [exp]	54.03	0.8246

Compare expression of checked genes

Potri.010G236951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.