Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03610 351 / 2e-120 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G09930 329 / 9e-112 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G36325 232 / 1e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03600 230 / 2e-73 SGNH hydrolase-type esterase superfamily protein (.1) AT5G03590 147 / 3e-42 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 135 / 1e-36 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G18430 129 / 3e-34 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20132 124 / 5e-32 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G33370 122 / 2e-31 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G53920 120 / 8e-31 GLIP5 GDSL-motif lipase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G406500 [exp] 349 / 2e-119 AT5G03610 425 / 3e-149 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G236800 [exp] 285 / 1e-94 AT5G03610 255 / 5e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G236951 [exp] 285 / 2e-94 AT5G03610 244 / 2e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G053100 [exp] 250 / 8e-81 AT5G03610 205 / 3e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G230100 [exp] 188 / 7e-58 AT5G03610 164 / 2e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024800 [exp] 129 / 6e-34 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051100 [exp] 127 / 1e-33 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024600 [exp] 121 / 4e-31 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.002G253400 [exp] 120 / 5e-31 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003253 [exp] 338 / 6e-115 AT5G03610 397 / 2e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10035600 [exp] 336 / 5e-114 AT5G03610 397 / 7e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10043441 [exp] 264 / 4e-88 AT5G03610 201 / 1e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028145 [exp] 261 / 3e-85 AT5G03610 234 / 2e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10042849 [exp] 257 / 2e-79 AT5G03610 240 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034139 [exp] 239 / 3e-77 AT5G03610 187 / 4e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026406 [exp] 121 / 5e-31 AT1G06990 350 / 4e-119 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003720 [exp] 118 / 4e-30 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1) Lus10003717 [exp] 117 / 1e-29 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034542 [exp] 116 / 2e-29 AT1G75900 340 / 6e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.010G237000.1 pacid=42799028 polypeptide=Potri.010G237000.1.p locus=Potri.010G237000 ID=Potri.010G237000.1.v4.1 annot-version=v4.1 ATGGAGAAACAAGTTCACTTCATCCACTTCTTGTTTGCCCTATTCTGTTTCTCTTACATAATGTTTTCAGTTGTTGCAGAAGGTCTTGTGAGTGGACACC ATGACAATGGATCAGTGAAGCTTTTTGTATTTGGGGATTCCTATGCAGATACCGGGAACTGGGAGAAATTTGCAGCTTCCTGGAAAGAGCCTTATGGATT CACTTTTCCTGGTAAACCAGCTGGTAGATTCTCTGATGGTCGTGTCTTGACAGATTACATAGCTTCATTTCTTGGTATAACATCTCCAGTCCCTTACACA TGGAGAAAAACTGTAGAAAAATCTGGTCTACAATTTGGGATGAACTTTGCATTTGGAGGAACTGGAGTCTTTGATACATTCATCAATGCACCAAATATGG CTACCCAAATTGATTTCTTTCAACAACTGCTTGAAGAAAAAGTTTACACCAAACAAGACCTTAATTCCTCCATTGTCCTGGTGTCCCTAGCAGGCAATGA CTACACTACTTATATTCAAAGAAATGGCAACTTTCAGGATTTGCCAGCCTTCACAACATCACTAATCAACCAGCTTTCTGCCAACCTGAAAAGAATAAAT GGTTTCGGAGTGCGAAAAATAGCAGTAACAGCATTGCAGCCTCTTGGATGCCTGCCGATATTGACAGCCTTCTCTTCATATCAGAATTGCAGTGAAAGTT GGAACACTGCCTCCAAGTTTCACAACCAGAAATTGCAGCAAGCAATACAAAGGATGAACAATGAGAGCGGAAAACACATGTACGAAACACTGGATCTGTA TACTGCATTCATGTCCAAATTGAATACCGCACGCCTTGCAGGAAACTTGAAGTTGAGGAGTTTTCTTACGCCATGTTGTGTGGGCGTGACAAGCAACTAC TCATGTGGAAACGTTGACAAGAATGGGGCAAAGACGTATGTGGTATGCGAGAAGCCGGAGTTGTCTGTCTTCTGGGACATGGTACATCCTGCACAGAATG GTTGGCATCAAGTCTATTCGTCTCTGAAATCTTCACTTCATCGACTCTATTAG
AA sequence Show only first row Show all	>Potri.010G237000.1 pacid=42799028 polypeptide=Potri.010G237000.1.p locus=Potri.010G237000 ID=Potri.010G237000.1.v4.1 annot-version=v4.1 MEKQVHFIHFLFALFCFSYIMFSVVAEGLVSGHHDNGSVKLFVFGDSYADTGNWEKFAASWKEPYGFTFPGKPAGRFSDGRVLTDYIASFLGITSPVPYT WRKTVEKSGLQFGMNFAFGGTGVFDTFINAPNMATQIDFFQQLLEEKVYTKQDLNSSIVLVSLAGNDYTTYIQRNGNFQDLPAFTTSLINQLSANLKRIN GFGVRKIAVTALQPLGCLPILTAFSSYQNCSESWNTASKFHNQKLQQAIQRMNNESGKHMYETLDLYTAFMSKLNTARLAGNLKLRSFLTPCCVGVTSNY SCGNVDKNGAKTYVVCEKPELSVFWDMVHPAQNGWHQVYSSLKSSLHRLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Potri.010G237000 [exp]	0	1
AT2G18370			Bifunctional inhibitor/lipid-t...		Potri.009G025200 [exp]	1.73	0.9120
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Potri.011G095100 [exp]	3.46	0.8830	ATGSL04.1
AT1G53270		ABCG10	ATP-binding cassette G10, ABC-...		Potri.011G112100 [exp]	7.74	0.8649	2
AT1G31130			unknown protein		Potri.010G250300 [exp]	10.48	0.8374
AT5G24280		GMI1	gamma-irradiation and mitomyci...		Potri.012G016100 [exp]	10.90	0.8431
AT5G25260			SPFH/Band 7/PHB domain-contain...		Potri.006G258900 [exp]	12.84	0.8516
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.007G135000 [exp]	13.63	0.8611
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Potri.014G110000 [exp]	16.12	0.8641
AT5G13980			Glycosyl hydrolase family 38 p...		Potri.014G143600 [exp]	16.43	0.8252
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.018G146200 [exp]	18.33	0.8147

Compare expression of checked genes

Potri.010G237000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.