Plant FIBer expression Database

Potri.010G237300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16980 204 / 2e-60 Major facilitator superfamily protein (.1.2)
AT2G16990 190 / 4e-55 Major facilitator superfamily protein (.1.2)
AT2G16970 181 / 6e-52 MEE15 maternal effect embryo arrest 15, Major facilitator superfamily protein (.1)
AT5G42210 125 / 6e-33 Major facilitator superfamily protein (.1)
AT3G43790 42 / 0.0006 ZIFL2 zinc induced facilitator-like 2 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G022100
[exp]
698 / 0 AT2G16980 211 / 3e-63 Major facilitator superfamily protein (.1.2)
Potri.005G245900
[exp]
259 / 5e-82 AT2G16980 412 / 3e-141 Major facilitator superfamily protein (.1.2)
Potri.004G178600
[exp]
258 / 3e-81 AT2G16980 417 / 2e-143 Major facilitator superfamily protein (.1.2)
Potri.009G138900
[exp]
256 / 9e-81 AT2G16990 405 / 1e-138 Major facilitator superfamily protein (.1.2)
Potri.002G016200
[exp]
251 / 7e-79 AT2G16980 384 / 5e-130 Major facilitator superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004157
[exp]
276 / 7e-88 AT2G16980 394 / 2e-133 Major facilitator superfamily protein (.1.2)
Lus10005626
[exp]
261 / 2e-82 AT2G16980 396 / 4e-135 Major facilitator superfamily protein (.1.2)
Lus10023994
[exp]
258 / 2e-81 AT2G16980 412 / 2e-141 Major facilitator superfamily protein (.1.2)
Lus10025087
[exp]
235 / 2e-72 AT2G16980 405 / 3e-138 Major facilitator superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.010G237300.1 pacid=42798573 polypeptide=Potri.010G237300.1.p locus=Potri.010G237300 ID=Potri.010G237300.1.v4.1 annot-version=v4.1
ATGGTGTTTAAGGATTGTTTAGTTGGGTTCAAAGAGCTTAGGCCTTTAGTACACTTGTTGTTGCCACTATTTTTTCATTGGATTGCTGAGGAAATGACTT
TTTCTGTTCTTGTTGATGTTCTTACTTCTGCTTTATGTCCTGGTCAAACTACTTGCTCTGAGGTTATTTATATCAGTGGTCTCCAACAAACGGTGGTGGG
AATTTTCAAAATGGTGGTAATACCACTCCTAGGCCAGCTTGCAGATGAGTATGGGCGTAAACCGCTTCTCCTCATTACTGTATCAACATCCATGTTCCCT
TTTGCCGTACTTGCCTGTAACCAATCTAGGGATGCTGTGTATGTGTACTATGTGCTTCGGACAATTTCATTTATTTTAAGTCAAGGGAGTATTTTCTGCA
TTGCTGTTGCTTATGCGGCAGATATTATCAAAGAAGAAAACAGGGCTACAGCATTTAGTTGGATCACTGGTTTCTTTTCTGCTTCTCATGTCGTAGGCAA
TCTTCTGGCACGTTTTCTCCCTGAGAAATACATCTTTGTGGTTTCAATTGCTCTCTTGATCTTTGGTTCAGTTTATATGTATTTCTTTCTAGTTGAGACA
GTTGAACGGGTTGATAAGAGGGAGCGAGATTCAACCTTCTTGACTAAGATAATAAACGTCACTCGCAAAAGATATGAATCAATGAGATATGCAGCAGTGG
TAGTGTTTAGAAGTCCTACACTGAAAATCATTTCATTCGTTTCCTTCTTCTATGAGTTGGGAATGTCTGGCATCAGTTCAGTTTTACTATTCTATCTGAA
GGCAGTGTTTGGTTTTAACAAGAATCAATATTCGGAAATTCTGTCAGCGGTAGGAATTGGTGCAATCTTTTCTCAGATTTTGGTGCTTCCTCTTCTCAGT
CCATTGGTTGGAGAGGGAGTGATATTATGTCTAGCCTTACTTGCATCAATAGCTTATGGTTTGCTTTATGGCTTGGCGTGGGCATCTTGGGTGCCATACT
TGAGTGCCGCATTTGGAGCCATTTATGTCCTCGTGAAGCCTGCTACTTATTCTGTTATTTCTAAAGGATCAAGCTCAGTGAATCAGGGAAAAGTGCAGGG
ATTTATTGCCGGTGTCCAATCAATAGCAAGTTTATTATCCCCACTTGCAATGAGTCCATTGACTTCATGGTTCCTCTCTAGTGATGCACCTTTCAACTGT
AAAGGTTTCAGCATCATAGTTGCTTCTGTAAGCATGATGATTGCTTTATGCTTTGCTTGCCTGCTTAAGCCGGCCGAAATGTCGGGCCATGACATGGAGG
AAGAAATTGAAGCACCACTTTTAGGTGAAAGTTAA
AA sequence
>Potri.010G237300.1 pacid=42798573 polypeptide=Potri.010G237300.1.p locus=Potri.010G237300 ID=Potri.010G237300.1.v4.1 annot-version=v4.1
MVFKDCLVGFKELRPLVHLLLPLFFHWIAEEMTFSVLVDVLTSALCPGQTTCSEVIYISGLQQTVVGIFKMVVIPLLGQLADEYGRKPLLLITVSTSMFP
FAVLACNQSRDAVYVYYVLRTISFILSQGSIFCIAVAYAADIIKEENRATAFSWITGFFSASHVVGNLLARFLPEKYIFVVSIALLIFGSVYMYFFLVET
VERVDKRERDSTFLTKIINVTRKRYESMRYAAVVVFRSPTLKIISFVSFFYELGMSGISSVLLFYLKAVFGFNKNQYSEILSAVGIGAIFSQILVLPLLS
PLVGEGVILCLALLASIAYGLLYGLAWASWVPYLSAAFGAIYVLVKPATYSVISKGSSSVNQGKVQGFIAGVQSIASLLSPLAMSPLTSWFLSSDAPFNC
KGFSIIVASVSMMIALCFACLLKPAEMSGHDMEEEIEAPLLGES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G16980 Major facilitator superfamily ... Potri.010G237300
[exp]
0 1
AT5G42220 Ubiquitin-like superfamily pro... Potri.002G013500
[exp]
12.88 0.8345
AT5G17260 NAC ANAC086 NAC domain containing protein ... Potri.012G023900
[exp]
13.96 0.8173
AT3G07510 unknown protein Potri.014G176400
[exp]
14.49 0.7815
AT2G39140 PDE328, SVR1 SUPPRESSOR OF VARIEGATION 1, P... Potri.010G226901
[exp]
18.49 0.7775
AT1G18800 NRP2 NAP1-related protein 2 (.1) Potri.004G128701
[exp]
19.07 0.7957
Potri.009G092750
[exp]
22.80 0.8017
AT2G27500 Glycosyl hydrolase superfamily... Potri.009G163700
[exp]
25.92 0.7901
AT1G21280 unknown protein Potri.001G247404
[exp]
28.56 0.8236
AT1G65780 P-loop containing nucleoside t... Potri.004G077800
[exp]
30.00 0.7683
AT3G24255 RNA-directed DNA polymerase (r... Potri.006G175124
[exp]
32.61 0.8231

Potri.010G237300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.