Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NFU4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20970 367 / 8e-129 ATNFU2, NFU4 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) AT1G51390 348 / 1e-121 ATNFU1, NFU5 NFU domain protein 5 (.1) AT5G49940 66 / 5e-13 ATCNFU2, NFU2 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) AT4G25910 63 / 1e-11 ATCNFU3, NFU3 NFU domain protein 3 (.1) AT4G01940 54 / 3e-08 ATCNFU1, NFU1 NFU domain protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G022000 [exp] 363 / 4e-128 AT3G20970 253 / 2e-85 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) Potri.006G165600 [exp] 62 / 4e-11 AT4G25910 300 / 3e-104 NFU domain protein 3 (.1) Potri.004G222600 [exp] 60 / 2e-10 AT5G49940 293 / 3e-101 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Potri.003G009300 [exp] 60 / 2e-10 AT5G49940 279 / 1e-95 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Potri.002G192200 [exp] 53 / 3e-08 AT4G01940 263 / 1e-89 NFU domain protein 1 (.1) Potri.014G117700 [exp] 50 / 5e-07 AT4G01940 248 / 1e-83 NFU domain protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043440 [exp] 362 / 1e-126 AT3G20970 383 / 1e-134 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) Lus10034140 [exp] 343 / 9e-121 AT3G20970 369 / 3e-131 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) Lus10015481 [exp] 66 / 2e-12 AT5G49940 286 / 3e-98 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Lus10001439 [exp] 61 / 9e-11 AT4G25910 263 / 2e-89 NFU domain protein 3 (.1) Lus10001634 [exp] 61 / 2e-10 AT4G25910 260 / 7e-87 NFU domain protein 3 (.1) Lus10009999 [exp] 52 / 1e-07 AT4G01940 257 / 8e-87 NFU domain protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0232 [poplar] [flax] NifU PF01106 [poplar] [flax] NifU NifU-like domain CL0232 [poplar] [flax] PF08712 [poplar] [flax] Nfu_N Scaffold protein Nfu/NifU N terminal
Representative CDS sequence Show only first row Show all	>Potri.010G237400.1 pacid=42799055 polypeptide=Potri.010G237400.1.p locus=Potri.010G237400 ID=Potri.010G237400.1.v4.1 annot-version=v4.1 ATGAAGGGTTTTGGCAGATTAATATCGCGAGCTCTATCAAACCAAAAAAGTTTCGGACTTTGCAGAGAAATCAACACTACATGTCGTTTGACTCCTCGCC GCTTTATACATGTTTCATCAGCAACAACAGCGTTTTGGCACAGCAGCGGTGGTGCTTTCCCTGATTCGAAAACGTTGGCTTCTTCTTTGCATCCTGAGAA ATTGACCGTTTTGACAGGGCAGAGGAGGACCATGTTTATACAAACTCAATCCACACCAAATCCATCATCCCTTATGTTTTATCCTGGGAAGCCGGTGATG GATGTAGGAAGTGCGGATTTCCCAAATGCACGTTCAGCCATGAATTCTCCATTGGCTAAAGCTATTTATGGAATCGATGGTATCAATCGAGTTTTCTTTG GACCTGATTTTATCACCATAACAAAGTCAGATGATGCTACTTGGGAATTCCTAAAGCCTGAAATATTTGCAGCTATCATGGACTTCTATTCTTCTGGAGA ACCATTGTTTCTAGACTCGCAAACTGCTGCAGCGAAGGACACGGCTATTAGTGAGGATGACTCAGAAACTGTTGCAATGATTAAAGAGCTGTTGGAGACT CGTATTCGACCAGCAGTGCAGGACGATGGTGGAGATATTGAGTATCAGGGTTTTGATGAGGAAACTGGAATAGTCAAATTGAAAATGCAAGGAGCATGCA GTGGCTGTCCGAGCTCATCTGTCACTTTGAAATCTGGAATAGAGAATATGCTGATGCATTATGTACCAGAGGTGAAAGGTGTGGAACAAGAATTAGATGC TGAAGATGATGAAGCAGCATTGACCAGTCAGATGGAGTAG
AA sequence Show only first row Show all	>Potri.010G237400.1 pacid=42799055 polypeptide=Potri.010G237400.1.p locus=Potri.010G237400 ID=Potri.010G237400.1.v4.1 annot-version=v4.1 MKGFGRLISRALSNQKSFGLCREINTTCRLTPRRFIHVSSATTAFWHSSGGAFPDSKTLASSLHPEKLTVLTGQRRTMFIQTQSTPNPSSLMFYPGKPVM DVGSADFPNARSAMNSPLAKAIYGIDGINRVFFGPDFITITKSDDATWEFLKPEIFAAIMDFYSSGEPLFLDSQTAAAKDTAISEDDSETVAMIKELLET RIRPAVQDDGGDIEYQGFDEETGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGVEQELDAEDDEAALTSQME

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Potri.010G237400 [exp]	0	1	NFU4.2
AT5G42960			unknown protein		Potri.014G181000 [exp]	1.41	0.8362
AT2G39725			LYR family of Fe/S cluster bio...		Potri.001G018100 [exp]	2.23	0.8094
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.011G011300 [exp]	2.44	0.8207
AT2G29900		PS2	Presenilin-2 (.1)		Potri.015G058301 [exp]	3.31	0.7895
AT3G15090			GroES-like zinc-binding alcoho...		Potri.001G373200 [exp]	3.74	0.8044
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Potri.001G360100 [exp]	5.19	0.8185
AT3G06760			Drought-responsive family prot...		Potri.011G057200 [exp]	5.29	0.7814
AT3G53230			ATPase, AAA-type, CDC48 protei...		Potri.016G091600 [exp]	5.91	0.7580	Pt-CDC48.2
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Potri.006G083300 [exp]	12.24	0.7035
AT4G27130			Translation initiation factor ...		Potri.007G122700 [exp]	14.07	0.7977

Compare expression of checked genes

Potri.010G237400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.