Plant FIBer expression Database

MVD1.2 (Potri.010G237900) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol MVD1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54250 688 / 0 GHMP kinase family protein (.1)
AT2G38700 658 / 0 ATMVD1, MVD1 mevalonate diphosphate decarboxylase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G021100
[exp]
800 / 0 AT3G54250 683 / 0.0 GHMP kinase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043438
[exp]
741 / 0 AT3G54250 681 / 0.0 GHMP kinase family protein (.1)
Lus10034147
[exp]
734 / 0 AT3G54250 674 / 0.0 GHMP kinase family protein (.1)
Lus10008966
[exp]
724 / 0 AT3G54250 668 / 0.0 GHMP kinase family protein (.1)
Lus10028855
[exp]
669 / 0 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0329 S5 PF00288 GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence
>Potri.010G237900.2 pacid=42798141 polypeptide=Potri.010G237900.2.p locus=Potri.010G237900 ID=Potri.010G237900.2.v4.1 annot-version=v4.1
ATGGCAGGGAAACCATGGGTGAGGATGGTGACTGCACAGACACCAACAAATATAGCTGTGATAAAGTACTGGGGCAAGAGAGATGAGACCTTGATTTTGC
CTGTTAATGATAGCATAAGTGTCACTCTTGATCCGGCTCATCTTTGTACAACCACAACTGTTGCTGTTAGTCCTAGTTTTGACCAGGATCGGATGTGGCT
CAATGGAAAGGAGATTTCCCTTTCTGGAGGCAGGTACCAAAATTGTTTAAGGGAAATTCGTGCCCAGGCTTGTGATGCTGAGGATGAAGAGAAGGGTATC
AAGATTACAAAGAAGGATTGGGAGAAATTGCATGTGCATGTTGCATCATACAACAATTTCCCTACTGCTGCTGGACTGGCTTCCTCTGCAGCTGGCTTTG
CTTGTCTTGTTTTTGCCCTTGCAAAGCTGATGAATGCAAAAGAAGACAATAGTGAACTTTCTGCTATTGCAAGGCAAGGTTCTGGCAGTGCCTGTCGCAG
TTTATTTGGTGGATTTGTGAAGTGGATCATGGGAAAAGCTGAGGATGGAAGTGATAGCCTTGCTGTTCAACTTGTAGACGAAAAGCACTGGGATGAACTT
GTTATTATTATCGCTGTGGTAAGTTCACGGCAGAAAGAAACAAGTAGCACCACAGGAATGCGGGACAGTGTTGAAACTAGCTTGCTTTTGCAACACAGAG
CTAAGGAAGTTGTACCGAAACGCATTAAACAAATGGAAGAAGCCATAAAGAATCGTGATTTTGGATCTTTTGCACAATTAACCTGTGCAGATAGCAATCA
GTTCCATGCAGTCTGCTTGGATACATGTCCCCCAATATTCTACATGAATGATACATCTCACAGGATAATCAGCTGTGTTGAAAAATGGAATCGCTCAGAA
GAAACACCTCAGGTAGCTTATACGTTTGATGCTGGGCCCAATGCAGTTCTGATTGCACATAATAGAAAGGCTGCTACCCAGTTATTGCAGAAGCTGCTTT
TTTACTTCCCTCCAAGTTCCGATGCTGATTTGAACAGTTATGTTATAGGTGATAAGTCCATACTAAAAGATGCTGGGATTGAAGATATGAAGGATGTGGA
AGCTTTGTCACCACCTCCAGAAATTAAGAATGCCCAGAGAAGCAAAGGAGATGTCAGTTATTTCATCTGTACGAAACCTGGTAGAGGTCCTGTTTTGCTC
TCTGATGAAAGCCAGGCTCTTCTCCATCCTGAAACTGGGCTGCCCAAATGA
AA sequence
>Potri.010G237900.2 pacid=42798141 polypeptide=Potri.010G237900.2.p locus=Potri.010G237900 ID=Potri.010G237900.2.v4.1 annot-version=v4.1
MAGKPWVRMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPAHLCTTTTVAVSPSFDQDRMWLNGKEISLSGGRYQNCLREIRAQACDAEDEEKGI
KITKKDWEKLHVHVASYNNFPTAAGLASSAAGFACLVFALAKLMNAKEDNSELSAIARQGSGSACRSLFGGFVKWIMGKAEDGSDSLAVQLVDEKHWDEL
VIIIAVVSSRQKETSSTTGMRDSVETSLLLQHRAKEVVPKRIKQMEEAIKNRDFGSFAQLTCADSNQFHAVCLDTCPPIFYMNDTSHRIISCVEKWNRSE
ETPQVAYTFDAGPNAVLIAHNRKAATQLLQKLLFYFPPSSDADLNSYVIGDKSILKDAGIEDMKDVEALSPPPEIKNAQRSKGDVSYFICTKPGRGPVLL
SDESQALLHPETGLPK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G54250 GHMP kinase family protein (.1... Potri.010G237900
[exp]
0 1 MVD1.2
AT3G57450 unknown protein Potri.009G058500
[exp]
16.88 0.7593
AT5G48230 EMB1276, ACAT2 EMBRYO DEFECTIVE 1276, acetoac... Potri.014G168700
[exp]
18.11 0.7457
AT1G60810 ACLA-2 ATP-citrate lyase A-2 (.1) Potri.008G188900
[exp]
20.39 0.6848 Pt-ACLA.1
AT2G01140 PDE345 PIGMENT DEFECTIVE 345, Aldolas... Potri.010G117900
[exp]
22.84 0.6656
AT3G60450 Phosphoglycerate mutase family... Potri.002G141000
[exp]
23.91 0.6684
AT2G22250 ATAAT, AAT, MEE... MATERNAL EFFECT EMBRYO ARREST ... Potri.007G088426
[exp]
43.47 0.6912
AT1G70780 unknown protein Potri.008G131600
[exp]
51.38 0.6619
AT2G32070 Polynucleotidyl transferase, r... Potri.006G262500
[exp]
52.19 0.7084
AT5G27450 MVK, MK mevalonate kinase (.1.2.3) Potri.013G024000
[exp]
59.17 0.6469
AT2G29420 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, ... Potri.010G070900
[exp]
88.94 0.6878

Potri.010G237900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.