Plant FIBer expression Database

Potri.010G238000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30240 602 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014364
[exp]
796 / 0 AT1G30240 591 / 0.0 unknown protein
Lus10026071
[exp]
779 / 0 AT1G30240 601 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF08167 RIX1 rRNA processing/ribosome biogenesis
Representative CDS sequence
>Potri.010G238000.1 pacid=42799180 polypeptide=Potri.010G238000.1.p locus=Potri.010G238000 ID=Potri.010G238000.1.v4.1 annot-version=v4.1
ATGGCGACTTCAGAAACTGTGATTAAGGACATGTACGACGTCGGATTAAAACCTCGTATGATCCGTACGCTTCTAAAAGAAGATGTCCCTGACGATAAAA
TCCCATTTGATTCTCCATCAAAACTCTCCCGTATTATCTCCTGCATTCAGTCTCACAAACTCTTATCAGAGCCTTCAATCACTGATAACAACAAACAAAT
CGAACGGTGGAAGTCCTCCGTCAATGATTGGGTCACTCGCTTGTTGTCTCTTATCAGTAAAACCACCACCACACCAGATAAATGCTGGGCTGGAATTTGC
TTGTTGGGGGTGACGTGTCAAGAGTGTAATGCCGACCGGTTTCTGGGGTCTTATGCTGCTTGGTTTGATAAAATGTTAACGCATATTCAGTCACGAGGGG
ATTCTCAGTTTGTGAAGGTGGCTGCTTGTACCTCGATATCGGATTTGATCACAAGGTTGGCGGGATTTCCAAATGTGAAAAAGGAGGGGACTTCACTTTC
TGGAAAAGTCATTCAACCTGTTTTAAAGCTGTTGAATGAGGATAGTTCAGAGGCTGTATTGGAAGGAGCAATTCATCTGTTATGCACTGTTATATCTTCC
TTTCCTGCTACACTTCAGCGTCATCATGAAAGTGTCGAAGCTGCTATTACATCAAAAATATTTTCAGGAAAATTCAGTGTAAATTTGATGAAGAAGCTAG
CTCATTGCCTAGCATTGCTTCCCAAATCAAAGGGAGATGAAGATAGCTGGATTTCAGCAATGAGGAAGGTTCTGTTATTGGTAAATGGTTACCTAACTGA
AATCTTCACCGGTCTAGAGGAAGAAACAAAATGGGATGAAGCTGTTAGATTATTGGTTCCGCCAGGAGAAGTTCCTCCACCTTCTTTATGGGGTCAAAAG
TTGTTAGAGGATACCTCAGACAAGGAAAGAAAGAGATCCAAGCTGTGTAGTATCTCTATGTTCATGCTTAGCTGTTGTGAAATGCTTACAAATTCATATC
CTGTCCAGGTTTCAGTGCCTGTTCGCTCATTACTGGCCCTTGTTGAGAGAGTGCTGATGGTCAATGGCTCATTGTCACCAACCACATCATCCTTTGTGAT
TTTAGCAGAACAAGAGTTCATTTGCTCTGAACTTCCAGTTCTGCACTCATATGCTTTGGAACTTCTTGCTTCAGTCATAAAGGGGATTCGCAGTCAACTA
TTGCCACATGCTGCATATATTGTGAGGCTTGTTAAAGAATATTTTAAGAGATGTGAGTTACCAGAGTTAAGGATAAAAGTCTACTCCATCACAAAGTTGT
TGTTGATGTCCATGGGTATTGGAATAGCGATATATCTTGCACAAGAAGTTGTCAACTGCTCTCTTCATGATTTAAATCCCATCCTTGATGGTACATCTTT
TCATGCAAATGCAAAATCCGAACTTTTGCTGCCACCTTTACACAGAAAGAGAAAGCATGGTGCGACTGGATCTCTTGAACAGCTCCATGACAGAATTGGT
TTGGAGGTGGAAACATCCAAGAACCGTCCAACAGCGATTTCTGTGAAGATAGCTGCACTCGGGGCATTGGAAACTCTTCTAACTGTGGGTGGCGGTTTGA
GATCCGAGTCTTGGCGTTCAAAAGTTGATAATCTTTTGATAACTATTGCAACAGAATCCTGTAAAGAAGGATGGGTTAGTGATGAAAGCAAAACTTTCTT
GCCCAATGAATCAACCCTAACATGCTCAGATTTACAGTTAGCAGCATTACATGCACTTTTGGCATCTCTCCTTTCTCCTTCTGGTGTACGTCCCCCACAT
TTAGCTCCTGCTCTTGAGCTTTTCCGTAGAGGCAGGCAAGAAATTGGAACAAAAGTATCTGAATTTTGTGCCTACGCACTCCTAGCCTTGGAGGTGCTTA
TACACCCCCGGGCACTTCCGCTGGCTGATTTTCCCTCTGCGAGCTCCTTCAATGAAGTTAACCACAGATTCCCAGAGAATATATACTCTGTTGCCCAGAA
GCACAGTAACCCATATTCAAGTGGCGTGCAGGACACAGGACATGGCCTTTCTGATTCAGATGATGATTTGTATAAGAGTTGGCTGGATAGTAGCAAGGAA
ACAGAGGCTCCAGTGGGTAAAAGTATGGACACTGAAAGGCCTTCTGAAACTCTAAGGGTTCAACAGGGAGAAAATATTCCCGTGGCTGGTTCATCAGGTG
CAAAAAGTCCTCGGAGAAATGGGCACAGCCCAGCAGCTGCTAGTGCAGACATAGAGATGAGGCGTGGTGATGAAACAATGGTTGACTCACAGCAATTGCA
AGAATCCATGGAGCAGCATCAGGAATCTTCCAAAGGTGCCTCCATTCCTACTGTTACTGGTGATCCAAATGTTACCACCGTGGACTTGACAAGTTTTGCT
TCGAAAGATGATGCATTAAATTCCAGGGATACTGAAATGGCATCAGTGCAAGCCGTTGTGGCAGGTGAAAGTGACGGGCTTGCCACCAAAGATGGAAACA
CAACAACCTTAAGTGCTCAGAAAGGTACGACATTTGCTATTGAAGATGATAATCAACCAACTGATTCTCTCCCTGATATTGTGGATGTTGATCCAGATTC
TGATTAG
AA sequence
>Potri.010G238000.1 pacid=42799180 polypeptide=Potri.010G238000.1.p locus=Potri.010G238000 ID=Potri.010G238000.1.v4.1 annot-version=v4.1
MATSETVIKDMYDVGLKPRMIRTLLKEDVPDDKIPFDSPSKLSRIISCIQSHKLLSEPSITDNNKQIERWKSSVNDWVTRLLSLISKTTTTPDKCWAGIC
LLGVTCQECNADRFLGSYAAWFDKMLTHIQSRGDSQFVKVAACTSISDLITRLAGFPNVKKEGTSLSGKVIQPVLKLLNEDSSEAVLEGAIHLLCTVISS
FPATLQRHHESVEAAITSKIFSGKFSVNLMKKLAHCLALLPKSKGDEDSWISAMRKVLLLVNGYLTEIFTGLEEETKWDEAVRLLVPPGEVPPPSLWGQK
LLEDTSDKERKRSKLCSISMFMLSCCEMLTNSYPVQVSVPVRSLLALVERVLMVNGSLSPTTSSFVILAEQEFICSELPVLHSYALELLASVIKGIRSQL
LPHAAYIVRLVKEYFKRCELPELRIKVYSITKLLLMSMGIGIAIYLAQEVVNCSLHDLNPILDGTSFHANAKSELLLPPLHRKRKHGATGSLEQLHDRIG
LEVETSKNRPTAISVKIAALGALETLLTVGGGLRSESWRSKVDNLLITIATESCKEGWVSDESKTFLPNESTLTCSDLQLAALHALLASLLSPSGVRPPH
LAPALELFRRGRQEIGTKVSEFCAYALLALEVLIHPRALPLADFPSASSFNEVNHRFPENIYSVAQKHSNPYSSGVQDTGHGLSDSDDDLYKSWLDSSKE
TEAPVGKSMDTERPSETLRVQQGENIPVAGSSGAKSPRRNGHSPAAASADIEMRRGDETMVDSQQLQESMEQHQESSKGASIPTVTGDPNVTTVDLTSFA
SKDDALNSRDTEMASVQAVVAGESDGLATKDGNTTTLSAQKGTTFAIEDDNQPTDSLPDIVDVDPDSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G30240 unknown protein Potri.010G238000
[exp]
0 1
AT1G10490 Domain of unknown function (DU... Potri.007G079300
[exp]
1.41 0.8913
AT3G09720 P-loop containing nucleoside t... Potri.019G065300
[exp]
2.00 0.8531
AT1G48920 ATNUC-L1, PARL1 PARALLEL 1, nucleolin like 1 (... Potri.007G071100
[exp]
3.87 0.8525
AT1G48920 ATNUC-L1, PARL1 PARALLEL 1, nucleolin like 1 (... Potri.005G093100
[exp]
4.00 0.8234
AT1G63810 unknown protein Potri.007G024600
[exp]
4.00 0.8472
AT2G34357 ARM repeat superfamily protein... Potri.006G137900
[exp]
4.89 0.8342
AT3G60500 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuc... Potri.009G047500
[exp]
5.47 0.8221
AT4G02400 U3 ribonucleoprotein (Utp) fam... Potri.002G203700
[exp]
7.00 0.8302
AT3G16810 APUM24 pumilio 24 (.1) Potri.010G005600
[exp]
8.36 0.8432
AT4G24240 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1... Potri.014G024200
[exp]
12.20 0.6305

Potri.010G238000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.