Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04740 392 / 6e-138 ACR12 ACT domain repeats 12, ACT domain-containing protein (.1.2) AT1G16880 295 / 7e-100 ACR11 ACT domain repeats 11, uridylyltransferase-related (.1.2) AT3G01990 55 / 2e-08 ACR6 ACT domain repeat 6 (.1) AT2G03730 52 / 2e-07 ACR5 ACT domain repeat 5 (.1.2) AT1G76990 51 / 4e-07 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT1G12420 49 / 2e-06 ACR8 ACT domain repeat 8 (.1) AT5G65890 48 / 4e-06 ACR1 ACT domain repeat 1 (.1.2) AT4G22780 47 / 1e-05 ACR7 ACT domain repeat 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G020700 [exp] 506 / 0 AT5G04740 370 / 1e-129 ACT domain repeats 12, ACT domain-containing protein (.1.2) Potri.008G010400 [exp] 284 / 6e-96 AT1G16880 359 / 1e-125 ACT domain repeats 11, uridylyltransferase-related (.1.2) Potri.010G248700 [exp] 282 / 5e-95 AT1G16880 363 / 4e-127 ACT domain repeats 11, uridylyltransferase-related (.1.2) Potri.015G100300 [exp] 56 / 8e-09 AT1G69040 483 / 3e-169 ACT domain repeat 4 (.1.2) Potri.001G327000 [exp] 56 / 1e-08 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.001G060100 [exp] 54 / 5e-08 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.012G102200 [exp] 54 / 7e-08 AT1G69040 473 / 5e-165 ACT domain repeat 4 (.1.2) Potri.012G083000 [exp] 53 / 1e-07 AT1G69040 493 / 3e-173 ACT domain repeat 4 (.1.2) Potri.010G138600 [exp] 52 / 2e-07 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033395 [exp] 303 / 3e-103 AT1G16880 375 / 1e-131 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10034852 [exp] 291 / 1e-98 AT1G16880 372 / 1e-130 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10033394 [exp] 285 / 3e-96 AT1G16880 357 / 9e-125 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10034851 [exp] 281 / 2e-94 AT1G16880 351 / 3e-122 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10012550 [exp] 56 / 1e-08 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10041543 [exp] 56 / 2e-08 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10011329 [exp] 47 / 9e-06 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10003136 [exp] 47 / 1e-05 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10018943 [exp] 44 / 9e-05 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10028646 [exp] 43 / 0.0002 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G238300.1 pacid=42797076 polypeptide=Potri.010G238300.1.p locus=Potri.010G238300 ID=Potri.010G238300.1.v4.1 annot-version=v4.1 ATGGCCTTCGCTAACAGTCTCCTCTCTTCTTCTTCTTCACCCTCTCAAATTCCCCATGGATCTAAAGATTTCAATTCCACTCCTCTAATCATTTCTCCTC ATGAGCGGTCCGCTTTCACTTTCTCTCCGATTCGTAACAAATTTTCCGAGCTTGGAATTGGAGTAATCGGTTCCTCGAGGAAAAAGAACATTTTATATGC TTCGGTCAATGATTTGAATGCATCGGCAAGTTCAACCTCACTGAAATCTGAGCAGGATGCTGATTTGGTTCCCATGCCAGTAGTTCTGATAGATCAAGAT TCAGATTCTGATGCAACAATTGTGCAACTCAGCTTTGGAGATCGTCTTGGAGCTCTTATTGATACGATGAATGCCCTGAAACATTTGGGATTGGATGTGG CAAAGGGAACTGTTCTCACTGATGGACCAGTCAAACAAACTAAGTTTTTCATTACACGATTGGACACTGGTCGCAAGGTTGAAGATCCTGATATGCTAGA GAGAATTCGACTTACCATCATCAACAATCTTTTGAAGTACCATCCAGAATCTAGTGAGCGACTTGCTATGGGCGAGGCTTTTGGAATAAAAGCTCCAGAG AAAAAGCTTGATGTTGATATTACAACTCATGTGCATGTCAAAGAAGACGGACCTAAGAGGAGCTTGCTCTGCATCGAGACAGCAGATCGACCTGGATTAC TTGTAGAAATAATCAAAATCATTGCTGATGTCAATATTGATGTTGAATCTGCAGAGATTGATACAGAGGGACTAGTTGCCAAAGATAAATTTCATGTCAG CTACAGAGGGGCAGCATTGACCAGCTCCCTGTCTCAGGTCCTGGTGAACTGTTTGCGTTACTACCTTCGGAGGCCTGAAACAGATATTGATAGTTATTAG
AA sequence Show only first row Show all	>Potri.010G238300.1 pacid=42797076 polypeptide=Potri.010G238300.1.p locus=Potri.010G238300 ID=Potri.010G238300.1.v4.1 annot-version=v4.1 MAFANSLLSSSSSPSQIPHGSKDFNSTPLIISPHERSAFTFSPIRNKFSELGIGVIGSSRKKNILYASVNDLNASASSTSLKSEQDADLVPMPVVLIDQD SDSDATIVQLSFGDRLGALIDTMNALKHLGLDVAKGTVLTDGPVKQTKFFITRLDTGRKVEDPDMLERIRLTIINNLLKYHPESSERLAMGEAFGIKAPE KKLDVDITTHVHVKEDGPKRSLLCIETADRPGLLVEIIKIIADVNIDVESAEIDTEGLVAKDKFHVSYRGAALTSSLSQVLVNCLRYYLRRPETDIDSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04740		ACR12	ACT domain repeats 12, ACT dom...		Potri.010G238300 [exp]	0	1
AT5G41120			Esterase/lipase/thioesterase f...		Potri.001G324200 [exp]	10.39	0.9097
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Potri.004G002600 [exp]	17.02	0.9080
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Potri.005G125800 [exp]	26.72	0.9043
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Potri.010G160100 [exp]	44.27	0.8730
AT1G13940			Plant protein of unknown funct...		Potri.006G262600 [exp]	47.90	0.8878
AT5G38260			Protein kinase superfamily pro...		Potri.007G125800 [exp]	48.29	0.8858
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Potri.001G355500 [exp]	58.69	0.8845
AT3G52105			unknown protein		Potri.006G054200 [exp]	61.02	0.8768
AT1G66920			Protein kinase superfamily pro...		Potri.007G125900 [exp]	62.52	0.8711
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Potri.016G123300 [exp]	68.93	0.8735

Compare expression of checked genes

Potri.010G238300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.