Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22450 512 / 2e-160 unknown protein AT2G19390 345 / 3e-99 unknown protein AT4G29790 322 / 3e-91 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G020600 [exp] 1999 / 0 AT5G22450 543 / 2e-172 unknown protein Potri.004G203500 [exp] 808 / 0 AT5G22450 958 / 0.0 unknown protein Potri.009G164400 [exp] 770 / 0 AT5G22450 952 / 0.0 unknown protein Potri.006G146600 [exp] 323 / 2e-91 AT2G19390 1068 / 0.0 unknown protein Potri.018G056400 [exp] 314 / 2e-88 AT2G19390 1022 / 0.0 unknown protein Potri.006G146700 [exp] 60 / 1e-09 AT4G29790 203 / 2e-60 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020607 [exp] 676 / 0 AT5G22450 916 / 0.0 unknown protein Lus10004878 [exp] 676 / 0 AT5G22450 916 / 0.0 unknown protein Lus10000530 [exp] 55 / 6e-08 AT5G22450 71 / 3e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G238400.1 pacid=42799853 polypeptide=Potri.010G238400.1.p locus=Potri.010G238400 ID=Potri.010G238400.1.v4.1 annot-version=v4.1 ATGTCTGGAAATGCAAGATACGAGCTGAGTTCGGCTAGTCCGGAGGAATTGGGTTTTACAGGTAGCTATTCTAATGGGCAGAGGGGGAGTTATCCTAGTG CCAGTTTTGATAGGTCTGGAAGTTTCAGTGAGAGTCGGATGTTCAGTTCTGGGGCAAGTACACCCCGGGCTTCTGCTTCACCAGCAAGGAGTATGGCCCC ACTTGCTCCATATCTGTCGTTGGATCCAGTTACAATGGGGGATCAAAAATATACTCGAACGGGCGAGTTAAGGAGGGCTTTTGGGATATCTCTAGGGAGT GCTACAGAAGATAATTCTTTTGGAGCTGCTCATTCAAAGCCCCCCCCTGCAGTGGATGCAGAGGAACTGAAGCGGATCAAAGCTGATGTATATGATGACA ATCAGAAGGCCAGGAATAGAATAAAAATGTGGAATGGATGCTTGCTAAGATGTCACAAATTCTCAGAAGAATTAAATTCAAAGAATCAACAACGAAATGA GATGCCAATGAATGAAAGATCAGTTGGTTCAAACTTTTTGAAGGTGGGAACACAGATTCATCGAAGCCCTTCAGACCTTGGGACTCAAAGATTAGAGGAC AGGGCTAAGACTCCTGTTTTGAATAAGCGAGTTCGCTCTTCTGTAGCAGAATCAAGGGCTGATGGCCGAAGCAATACGGTTCCGAGGCAGCCTTTGGTCA TGGGAAAAGACAGAGACATACACAGGGATGGTGGTGAAGTTTCTGATCTTGCTGAAGAAAAGGTCCGTAGGCTACCTGCTGGAGGGGAAGGGTGGGACAG AAAGATGAAAAAGAAACGTTCTGTTGGTCCTGTTTTTACCAGAACTATAGACAGTGATGGGGAAATTAAACGAGTGGTGCATCATAAGTTTAATAATGAA CCTGGTCTGCAGTCTTGCGATGCCCAAGGCTTCAGGTCAGGATCTTTTATTGGGATTAGTGGCATCAACAAGGCAGATGGCATTTCAGCATCTGCCAGTT CAAATGCCCGTGCCATTCCCAAAGAATCAGAAAGAGTTTCTTTGACAAGGGATTTTGCTGCTGGCATGAATAAGGAGCGGCTTGTAGTGAAAGCAAACAA TAAGGTAAATATTCTGGAGGACAATAATCATACAGTGAGCCCAAGTCCAGTCACAAAAGGAAAGGCTTCCAGGACACCTCGAACCGGCTTAGTAATGGCA GCAAATGTATCTCCTAATATTTCTCGTGCGCCTGGGGCCCTTGATGGCTGGGAACAAACACCAGGTATAACCAAAGGCAATTCTGTTGGGGGGCCTAATA ATCGCAAGCGTCCCCTGCCTACAGGGTCATCATCTCCCCCAATGGCTCAATGGGTTGGTCAGAGACCGCAAAAAATCTCTCGTACCAGAAGGGTGAATGT AGTGTCTCCGGTCTCTAACCACGATGAAGGGCAGATGTCATCAGAAAGAAGACATATTTCCGAATTTTCCACTCGAGTGAGTTCTGCTGGGATCAATGGG ACACCTCTTGCCAAGGATGTGGTTAATGGAACCAAACAAGTTAGAGTGAAACATGAAAATGTTTCATCTCCATCAAGATTATCTGAAAGCGAAGAATCTG GTGCTGGTGAAAATCATGAGGGTAAGCCAAAGGAGAAGGGAACAGGTAGTGGTGCTGTAGAGGAGAGATCCCTGAATCAGAATGTTGTTCCTTCTCTGTT GCTTACAAAGAAGAATAAAATGCTCAATAGGGAAGGCACTGGTGATGGCGTGCGGAGACAAGGAAGGACTGGTCGGGGTGCATCATCTTCTAGGATTAGC ATTTCTCCAATGAGGGAGAATCCAGCCTCAACCAAACCACTTAGAAGTACAAAGCCCATATCAGACAAGAGCGGAAGCAAGACAGGCCGTCCTCCTCTTA AGAAAATAGCAGATCGCAAGGCCTTAGCTCGTCTTGGGCAAACACCAATAAGTGGTTCCCCAGATTCCACAGGTGAATCAGATGATGATCGGGAAGAACT CTTAGCTGCTGCAATTTTTTCTTGCAATGCCAGCTATCTTTCCTGTTCTGGTTCTTTCTGGAAGAAAATGGAGCCAGTTTTTGCTCCCGTCTGCTCTGAG GATTCATCCTTCTTGAAACAAAATTTGAAATCTACTGAGGATCTTCAGAAGAGATTATCTGAGATGTTTGGTCGCAGCAATAATTCGGGTGATCTTGTGC TTGAAGAAGATATTCCATCTCAGCTTGTTCATGAAGAAAGTGAGGAAAACTTGCAGGACCAGGATCGACCAAAAAATTTGATGAGGACTTCAGATTTGGT AAATCCAGATCAGGACAGTAGTGCTTTATGTGGAGGCACAAGAAGAAGGAACAATGTTACTCCACTGTACCAAAGAGTGTTGTCTGCTCTGATTGTAGAA GATGAGTCTGAAGAATTTGCCGAAAACAGTGGAGGGAGGAATATTTCTTTTCAATATACTAGAGATAATTCTCCTGGTGATAGTTACCTCCCTATTGATT TTGAGCCTGGGAGCACAAATGGTATTGATTTTAATTATGAATCCATGTTGAGTTTTCAAAGTCAGAAGCAATCTTCTCTTGAAGGTTTTTCTTGTAATGG AAGCACTACTATTAATGGGATCAGTGGTTTTCACAAAAATTCCTATAATGATTATTCACTGCAAGGAAGTAATGGATTTATGCACTCGAAAACTGGAATG TTCCCTGGGCTTTCCGAGAATAATGACGAGAAACCAGCTATACATTCAAATGCCCTTGGCATTGCCGCCTATGATTGCCAATATGAGGAACTCGACCTGG AGGATAAACTCTTGATGGAGCTGCAGAGTGTTGGTCTATATCCAGAAACAGTGCCTGATTTAGCAGATGGAGAGGATGAAGTAATCAATCAAGATATCAT TGAACTTCAAAAGAAACTTCATCAAGCAGTTAAGGTTGGTAAGAAGGAGGAATACTTGGACAAAACAACTAAAGCAATCAAGGAAGGAAGGGAAACACAA GGATGGCCCCTTGAGCAGGTTGCAATGGACAGGCTTGTTGAATTGGCTTACAGAAAGCTGCTGGCTACTAGAGGAAATAGTGCTTCAAAATTTGGGGTCC CTAAGGTTTCAAAACAAGTTGCCTTGGCTTTTACAAAGAGGACTCTTGCTAAATGTAGAAAATTTGAAGATACAGGCAAAAGCTGTTTCTGTGAGCCCCC CCTTCGAGATGTCATTTTTGCTGCCCCTCGTGCAAATGTTGCAGAGTCCACAAGTTGCATTCAGGATCCAGGGGCATCAGGCTCTGTACCTGGTAGAGTT GAGAGGCACGATCTTTCCAATGATAAATTTGGCAGGGGTGCATTAGTTGACCAGGATTTTGCCAGGAATGGACCAATATTGAACAGAGGGAAGAAGAAGG AATTGCTGCTTGATGATGTTGGTGGTAATGCTTTATTCAAAGCCACATCATCTCTTGGTAATACTCTGCTGGGTGGAGCCAAGGGAAAGAGAAGTGAGAG AGAAAGGGACAAAGATGTTTTAGCCAGAAATTCTGTAACCAAAGCTGGTCGCGCCTCTCAGAGCAATATCAAGGGTGACCGTAAAACAAAATCAAAGCCC AAGCAGAAGATTGCTCAGCTTTCAACTTCTGGAGATAGAATTATCAACAAGTTCAAAGAAACAGGTAGCAATAAGAAAAGAGAAGCTGGGGCAACATCCA ATGGTTCAAATCCTGTAGATTCAGCTAAAGAAAGCAGGGGAGCAACACGCATGGCCAAGTTCCAAGGATTAGACCCTATAGAACTACACGACGGCAATGA TTTTGGTGACACTCAGGATCTGAATAGCTTGTTTGATGGGTTGCCAGAAAATGACTTGGTGGGTGAAATACTGCTCGACGACCTGCCCCTTCAAATTCCC ATGGACGACCTCTCTATGATTCTATAA
AA sequence Show only first row Show all	>Potri.010G238400.1 pacid=42799853 polypeptide=Potri.010G238400.1.p locus=Potri.010G238400 ID=Potri.010G238400.1.v4.1 annot-version=v4.1 MSGNARYELSSASPEELGFTGSYSNGQRGSYPSASFDRSGSFSESRMFSSGASTPRASASPARSMAPLAPYLSLDPVTMGDQKYTRTGELRRAFGISLGS ATEDNSFGAAHSKPPPAVDAEELKRIKADVYDDNQKARNRIKMWNGCLLRCHKFSEELNSKNQQRNEMPMNERSVGSNFLKVGTQIHRSPSDLGTQRLED RAKTPVLNKRVRSSVAESRADGRSNTVPRQPLVMGKDRDIHRDGGEVSDLAEEKVRRLPAGGEGWDRKMKKKRSVGPVFTRTIDSDGEIKRVVHHKFNNE PGLQSCDAQGFRSGSFIGISGINKADGISASASSNARAIPKESERVSLTRDFAAGMNKERLVVKANNKVNILEDNNHTVSPSPVTKGKASRTPRTGLVMA ANVSPNISRAPGALDGWEQTPGITKGNSVGGPNNRKRPLPTGSSSPPMAQWVGQRPQKISRTRRVNVVSPVSNHDEGQMSSERRHISEFSTRVSSAGING TPLAKDVVNGTKQVRVKHENVSSPSRLSESEESGAGENHEGKPKEKGTGSGAVEERSLNQNVVPSLLLTKKNKMLNREGTGDGVRRQGRTGRGASSSRIS ISPMRENPASTKPLRSTKPISDKSGSKTGRPPLKKIADRKALARLGQTPISGSPDSTGESDDDREELLAAAIFSCNASYLSCSGSFWKKMEPVFAPVCSE DSSFLKQNLKSTEDLQKRLSEMFGRSNNSGDLVLEEDIPSQLVHEESEENLQDQDRPKNLMRTSDLVNPDQDSSALCGGTRRRNNVTPLYQRVLSALIVE DESEEFAENSGGRNISFQYTRDNSPGDSYLPIDFEPGSTNGIDFNYESMLSFQSQKQSSLEGFSCNGSTTINGISGFHKNSYNDYSLQGSNGFMHSKTGM FPGLSENNDEKPAIHSNALGIAAYDCQYEELDLEDKLLMELQSVGLYPETVPDLADGEDEVINQDIIELQKKLHQAVKVGKKEEYLDKTTKAIKEGRETQ GWPLEQVAMDRLVELAYRKLLATRGNSASKFGVPKVSKQVALAFTKRTLAKCRKFEDTGKSCFCEPPLRDVIFAAPRANVAESTSCIQDPGASGSVPGRV ERHDLSNDKFGRGALVDQDFARNGPILNRGKKKELLLDDVGGNALFKATSSLGNTLLGGAKGKRSERERDKDVLARNSVTKAGRASQSNIKGDRKTKSKP KQKIAQLSTSGDRIINKFKETGSNKKREAGATSNGSNPVDSAKESRGATRMAKFQGLDPIELHDGNDFGDTQDLNSLFDGLPENDLVGEILLDDLPLQIP MDDLSMIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22450			unknown protein		Potri.010G238400 [exp]	0	1
AT3G21290			dentin sialophosphoprotein-rel...		Potri.003G033100 [exp]	1.00	0.9426
AT5G27460			Tetratricopeptide repeat (TPR)...		Potri.005G160100 [exp]	2.44	0.9149
AT1G77800			PHD finger family protein (.1....		Potri.002G089400 [exp]	2.82	0.9186
AT3G26730			RING/U-box superfamily protein...		Potri.014G145300 [exp]	3.16	0.9151
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Potri.014G138400 [exp]	3.60	0.9005
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.011G024800 [exp]	3.74	0.9262
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Potri.006G280200 [exp]	6.32	0.9080
AT3G63070			Tudor/PWWP/MBT domain-containi...		Potri.014G138700 [exp]	6.63	0.8897
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.008G041900 [exp]	7.00	0.9126
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.015G147200 [exp]	8.12	0.9048

Compare expression of checked genes

Potri.010G238400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.