Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18650 66 / 1e-12 MADS AGL103 AGAMOUS-like 103 (.1) AT5G41200 60 / 1e-10 MADS AGL75 AGAMOUS-like 75 (.1) AT5G40120 59 / 3e-10 MADS AGL76 AGAMOUS-like 76 (.1) AT5G40220 57 / 8e-10 MADS AGL43 AGAMOUS-like 43 (.1) AT5G65330 57 / 9e-10 MADS AGL78 AGAMOUS-like 78 (.1) AT5G39750 57 / 9e-10 MADS AGL81, EMB3008 EMBRYO DEFECTIVE 3008, AGAMOUS-like 81 (.1) AT5G38740 57 / 1e-09 MADS AGL77 AGAMOUS-like 77 (.1) AT5G39810 57 / 2e-09 MADS AGL98 AGAMOUS-like 98 (.1) AT5G58890 52 / 8e-08 MADS AGL82 AGAMOUS-like 82 (.1) AT5G37415 51 / 1e-07 MADS AGL105 AGAMOUS-like 105 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G020300 [exp] 265 / 5e-90 AT3G18650 75 / 3e-15 AGAMOUS-like 103 (.1) Potri.010G181300 [exp] 84 / 1e-19 AT3G18650 49 / 7e-07 AGAMOUS-like 103 (.1) Potri.004G222200 [exp] 69 / 5e-14 AT5G41200 65 / 5e-12 AGAMOUS-like 75 (.1) Potri.015G077800 [exp] 61 / 4e-11 AT4G02235 45 / 7e-06 AGAMOUS-like 51 (.1) Potri.001G214900 [exp] 46 / 6e-06 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1) Potri.007G120002 [exp] 44 / 7e-06 AT1G77980 97 / 1e-25 AGAMOUS-like 66 (.1) Potri.012G109900 [exp] 45 / 2e-05 AT5G55690 112 / 2e-28 MADS-box transcription factor family protein (.1) Potri.002G255700 [exp] 43 / 6e-05 AT5G55690 112 / 3e-28 MADS-box transcription factor family protein (.1) Potri.001G329800 [exp] 42 / 0.0001 AT5G55690 64 / 2e-11 MADS-box transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022594 [exp] 57 / 3e-10 AT3G18650 61 / 2e-11 AGAMOUS-like 103 (.1) Lus10024347 [exp] 55 / 4e-09 AT3G18650 63 / 8e-12 AGAMOUS-like 103 (.1) Lus10021494 [exp] 51 / 5e-08 AT3G18650 65 / 8e-13 AGAMOUS-like 103 (.1) Lus10037166 [exp] 51 / 2e-07 AT2G03060 282 / 2e-92 AGAMOUS-like 30 (.1.2) Lus10036761 [exp] 50 / 4e-07 AT2G03060 284 / 5e-93 AGAMOUS-like 30 (.1.2) Lus10014095 [exp] 45 / 1e-05 AT5G55690 87 / 3e-19 MADS-box transcription factor family protein (.1) Lus10019819 [exp] 45 / 2e-05 AT5G55690 83 / 7e-18 MADS-box transcription factor family protein (.1) Lus10012656 [exp] 42 / 2e-05 AT3G18650 59 / 9e-12 AGAMOUS-like 103 (.1) Lus10030450 [exp] 42 / 0.0003 AT2G03060 301 / 4e-100 AGAMOUS-like 30 (.1.2) Lus10019089 [exp] 41 / 0.0004 AT1G18750 279 / 3e-91 AGAMOUS-like 65 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.010G238900.1 pacid=42796777 polypeptide=Potri.010G238900.1.p locus=Potri.010G238900 ID=Potri.010G238900.1.v4.1 annot-version=v4.1 ATGACAACACTCAGAGAGAACAAGGCACCGCCCATAAAGAACAAGTCTTACGAGGAGAGGAAGCAAAACCTAAAGAAGAAAGCAAGTGAGCTTGCAACAT TGTGCGACGTTCCTGTTTGCCTAGTCTGTGTTAATCCTGATGGCTCCACTGAAACATGGCCAGAAGAAGAGGAGAGGGTTGTTGATGTTCTCATGGCTTA CAAAGCCCAAACAACATTAAAGAATGAAAGCAAGGAAGGTGAGAAGAGCACGGAGAAGGTTGTCGACAAGGCACCTCATGTTTTTGAAACTTGGGACACA AGGTTTGAGTACTTACCTGAGGAGTCTTTGGTGGATGTTTTGAAAATCTTGGATAGGCAGTTGCAGGTTGTGAATCGAGTTGTTGAGAAGGAACAGATTG GGAAGAAGAGAAAAATTTTGCAGGATGGAAGGAGCAGCAAAATTGTGCATGATGTTAATGATGATGGGTCTCAAAAAGCTGGTCTAATCACAAAAAATTT TCTTGATTCGGTTGGCTTGAACCTGACCAATTCATATACAGGAAACTACAGTGATATCAACAGTTTCTCGGGTAGAAATTCGGAGGGCAACAGTGATTTT GAGAAACCAGTGGATTTGGAGTTGCGTTTGTGA
AA sequence Show only first row Show all	>Potri.010G238900.1 pacid=42796777 polypeptide=Potri.010G238900.1.p locus=Potri.010G238900 ID=Potri.010G238900.1.v4.1 annot-version=v4.1 MTTLRENKAPPIKNKSYEERKQNLKKKASELATLCDVPVCLVCVNPDGSTETWPEEEERVVDVLMAYKAQTTLKNESKEGEKSTEKVVDKAPHVFETWDT RFEYLPEESLVDVLKILDRQLQVVNRVVEKEQIGKKRKILQDGRSSKIVHDVNDDGSQKAGLITKNFLDSVGLNLTNSYTGNYSDINSFSGRNSEGNSDF EKPVDLELRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Potri.010G238900 [exp]	0	1
					Potri.019G045466 [exp]	5.83	0.8211
					Potri.018G003201 [exp]	6.55	0.8213
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Potri.001G113800 [exp]	16.58	0.7961
AT2G15530			RING/U-box superfamily protein...		Potri.005G055667 [exp]	16.88	0.7733
AT2G32235			unknown protein		Potri.004G028100 [exp]	18.49	0.7919
					Potri.008G224246 [exp]	22.44	0.7915
AT5G08305			Pentatricopeptide repeat (PPR)...		Potri.007G073100 [exp]	24.61	0.8008
					Potri.008G224228 [exp]	24.81	0.7900
					Potri.019G045532 [exp]	29.39	0.7456
AT1G02370			Tetratricopeptide repeat (TPR)...		Potri.002G194400 [exp]	34.59	0.7869

Compare expression of checked genes

Potri.010G238900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.