Plant FIBer expression Database

Potri.010G239000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24830 754 / 0 arginosuccinate synthase family (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G020200
[exp]
922 / 0 AT4G24830 761 / 0.0 arginosuccinate synthase family (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012800
[exp]
786 / 0 AT4G24830 777 / 0.0 arginosuccinate synthase family (.1.2)
Lus10033978
[exp]
775 / 0 AT4G24830 767 / 0.0 arginosuccinate synthase family (.1.2)
Lus10013207
[exp]
720 / 0 AT4G24830 724 / 0.0 arginosuccinate synthase family (.1.2)
Lus10030725
[exp]
203 / 2e-63 AT4G24830 195 / 4e-61 arginosuccinate synthase family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0039 HUP PF00764 Arginosuc_synth Arginosuccinate synthase
Representative CDS sequence
>Potri.010G239000.2 pacid=42797985 polypeptide=Potri.010G239000.2.p locus=Potri.010G239000 ID=Potri.010G239000.2.v4.1 annot-version=v4.1
ATGGCTCAGTTGAAGGCAGTATCATCATCTTCATCCCTCAATCTCTCTGTTCATGTCCCTAAGAGAGATTTGTTTCTGTGTAGTAACAATGTATCTTTTG
CAAAGAAGTCAGCTTTGTTTCAAGAGTTGGGGGTTAGAAAGAGTGAGCTTCAGGGTGATGCAGTTGTGAGCAATAGAGGGAATACTCTTCGAGTTCATTG
CAATAAAGGGATTCAAGTAGTAGCATCCAGTGATAAAGTTACAGAGGTTTATGAAGCTACAAAGACTAAAGGACTAAGAGGAAAATTAAACAAGGTTGTT
TTAGCCTACAGTGGTGGCTTAGACACCTCAGTTATTGTCCCATGGCTACGGGAGAATTATGGTTGCGAGGTTGTTTGCTTCACTGCTGATGTTGGTCAGG
GAGTAGGGGAATTGGAAGGCTTGGAACAAAAGGCTAAGGCTAGTGGTGCTTGTCAGTTAGTGGTGAAGGACTTGCAGGAGGAATTTGTGAGAGATTTCAT
TTTTCCTTGCTTGCGAGCAGGTGCCATCTATGAGCGGAAATACTTATTGGGGACGTCAATGGCACGCCCTGTTATTGCAAAGGCCATGGTAGATGTTGCG
AAAGAAGTTGGAGCCGATGCTGTTGCTCATGGATGCACTGGAAAAGGAAATGATCAGGTTCGCTTTGAGCTCACCTTCTTTGCACTAAATCCTGAACTAA
ATGTTGTGGCTCCTTGGCGGGAATGGGATATCACAGGAAGAGAAGATGCCATTGAATATGCTAAGAAGCACAACGTACCCGTCCCAGTGACAAAAAAATC
CATATATAGCAGGGACAGGAACTTGTGGCACCTGAGCCATGAGGGTGACATTCTGGAAGACCCTGCTAATGAGCCAAAGGAAGACATGTACATGATGTCC
ACTAGTCCAGAAGCTGCACCTGAGAAACCTGAATATGTAGAAATTGGGATAGTGGCTGGCCTTCCTGTTTCAGTAAATGGGGAGAAGCTTTCCCCAGCTT
CTCTGCTTTCCTGCCTCAATGAGATTGGTGGGAAACATGGTATTGGCCGAATTGACATGGTTGAGAACCGACTTGTTGGTATGAAAAGTCGTGGAGTATA
CGAAACTCCTGGAGGCACCATTCTCTTCACTGCTGTACGTGAGCTGGAGTCATTAACACTAGATCGAGAAACAATGCAAGTTAAAGATTCACTTGCTCTC
AAGTATGCTGAGCTAGTGTATGCAGGCAGGTGGTTTGACCCACTGCGTGAATCCATGGATGCATTTATGGAGAAGATCACAGAGACAACAACTGGTTCAG
TCAGACTTAAGTTGTACAAAGGATCCGTATCAGTAGTTAGCCGGACAAGCCCCAAAAGCCTGTATAGAGAAGACATATCCTCCTTTGAGAGTGGGCAGAT
ATATGATCAGGCTGATGCTGCTGGATTTATTCGGCTCTATGGTCTTCCAATGAGGGTTAGGGCAATGCTAGAGAAGGGCATCTAA
AA sequence
>Potri.010G239000.2 pacid=42797985 polypeptide=Potri.010G239000.2.p locus=Potri.010G239000 ID=Potri.010G239000.2.v4.1 annot-version=v4.1
MAQLKAVSSSSSLNLSVHVPKRDLFLCSNNVSFAKKSALFQELGVRKSELQGDAVVSNRGNTLRVHCNKGIQVVASSDKVTEVYEATKTKGLRGKLNKVV
LAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGVGELEGLEQKAKASGACQLVVKDLQEEFVRDFIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVA
KEVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDITGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPANEPKEDMYMMS
TSPEAAPEKPEYVEIGIVAGLPVSVNGEKLSPASLLSCLNEIGGKHGIGRIDMVENRLVGMKSRGVYETPGGTILFTAVRELESLTLDRETMQVKDSLAL
KYAELVYAGRWFDPLRESMDAFMEKITETTTGSVRLKLYKGSVSVVSRTSPKSLYREDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLEKGI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G24830 arginosuccinate synthase famil... Potri.010G239000
[exp]
0 1
AT5G41970 Metal-dependent protein hydrol... Potri.003G145900
[exp]
1.00 0.8597
AT1G04190 TPR3 tetratricopeptide repeat 3, Te... Potri.010G082900
[exp]
1.73 0.8127
AT2G33340 MAC3B MOS4-associated complex 3B (.... Potri.008G171600
[exp]
2.00 0.8362
AT4G15770 RNA binding (.1) Potri.010G024400
[exp]
4.47 0.7957
AT4G29510 ATPRMT1B, ATPRM... PROTEIN ARGININE METHYLTRANSFE... Potri.018G067200
[exp]
6.92 0.8004 PRMT901
AT4G26300 EMB1027 embryo defective 1027, Arginyl... Potri.002G198500
[exp]
7.00 0.7871
AT2G43110 unknown protein Potri.014G150100
[exp]
7.41 0.7693
AT1G63660 GMP synthase (glutamine-hydrol... Potri.003G128200
[exp]
12.36 0.7795
AT4G21220 AtLpxD2 lipid X D2, Trimeric LpxA-like... Potri.004G039400
[exp]
12.64 0.6964
AT3G02320 N2,N2-dimethylguanosine tRNA m... Potri.017G099200
[exp]
13.96 0.7619

Potri.010G239000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.