Plant FIBer expression Database

Potri.010G239400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G019900
[exp]
44 / 8e-06 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G239400.3 pacid=42798469 polypeptide=Potri.010G239400.3.p locus=Potri.010G239400 ID=Potri.010G239400.3.v4.1 annot-version=v4.1
ATGCAGTACAAAGGGAAGATGGGATTGCTCCTTGGACTCCTCGTGATCACCGGCTTATGCCTGTCTGCATCTTCAACACCACTCGACGACAAGCCCTTCC
TTCCAGATCCTTTGCAGGAGAATGATCTAGGAGCTGCAGGCACACATGAACATTGCATCGGTAGCACTGACGATGATTCTAATGAAAGAAGTGGCATAGT
ACACAGCAGCAAATTTGCACATGGCGGCTCAGCTCATGGAGGTGCACGTGGTGGTGGAGCAACTGGGGCAGCTGACAATGCACACGGTGGTGGCGAAGCA
CAAGGAGGTGGAGCAGTCGTCCCGGTAATCATAGCAGGTGCTGCAGCTAATCACCGACCAAACAACCACCACAATGCTGGCAGCCGCCAAGTGAACTGCA
TAGTGCCTCCATTGATTACAACCACCTTTGTTGCTCTCATTGTACATTAA
AA sequence
>Potri.010G239400.3 pacid=42798469 polypeptide=Potri.010G239400.3.p locus=Potri.010G239400 ID=Potri.010G239400.3.v4.1 annot-version=v4.1
MQYKGKMGLLLGLLVITGLCLSASSTPLDDKPFLPDPLQENDLGAAGTHEHCIGSTDDDSNERSGIVHSSKFAHGGSAHGGARGGGATGAADNAHGGGEA
QGGGAVVPVIIAGAAANHRPNNHHNAGSRQVNCIVPPLITTTFVALIVH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G239400
[exp]
0 1
AT1G64720 CP5 Polyketide cyclase/dehydrase a... Potri.012G021400
[exp]
5.47 0.8348
AT5G63030 GRXC1 glutaredoxin C1, Thioredoxin s... Potri.015G078900
[exp]
8.24 0.8352 PtrcGrx_C1.1
AT2G16050 Cysteine/Histidine-rich C1 dom... Potri.009G110500
[exp]
13.26 0.8218
AT4G00550 DGD2 digalactosyl diacylglycerol de... Potri.014G079400
[exp]
19.02 0.8452 Pt-DGD2.1
AT2G37390 NAKR2 SODIUM POTASSIUM ROOT DEFECTIV... Potri.006G213900
[exp]
19.97 0.8247
AT1G22160 Protein of unknown function (D... Potri.005G168900
[exp]
20.42 0.8424
AT1G10155 ATPP2-A10 phloem protein 2-A10 (.1) Potri.015G120200
[exp]
23.02 0.8125
AT5G22300 AtNIT4, NIT4 nitrilase 4 (.1) Potri.004G199600
[exp]
25.27 0.8131 Pt-NIT2.2
AT1G31830 Amino acid permease family pro... Potri.003G103600
[exp]
32.68 0.8281
Potri.001G077040
[exp]
33.76 0.7952

Potri.010G239400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.