Plant FIBer expression Database

Potri.010G239700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54290 348 / 1e-119 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G019700
[exp]
559 / 0 AT3G54290 313 / 1e-105 unknown protein
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01814 Hemerythrin Hemerythrin HHE cation binding domain
Representative CDS sequence
>Potri.010G239700.1 pacid=42798975 polypeptide=Potri.010G239700.1.p locus=Potri.010G239700 ID=Potri.010G239700.1.v4.1 annot-version=v4.1
ATGGGAAATTGTTTTACTAGTTCAAAGCAATCAATGGCAGAGTTAGCTCCTTGTGATTTCATCAAATCAACCCCGGCCGTCCAATTATACGGTGACCCCA
CCAGTTCTTTCACTCTCTACCTTCATCTTGCTCTTCTTTACAAGACTAGAGCGCTTCAATTTACACCCACTAATGACCCGATTCCAGTGGTCCAATTCGG
GCCCGAAACAGTTTCGGGTCCCCGAGAGATGATGGTTCGGTTCATTGATGTGAAGTTGCCGCAACCGCCGTTGATGGTGGTGGTGGAAGAGGGAGGTGAA
ACGGCGGCGTTGGTGGTTAAAATGGTGGCGATGCAACATAGGAGTGTGGTGTGGCATTTGGAGAGGATGGTGTGGTGGAGTGAGGATTTGGTGACACGTG
GTGGGAAGAAGAATGGTGATCCGACTATGGGGAGTGCGAGGATGGAGGTGAGGAAGTTTGGGAAGAGTTATTCGCAGTTGCTAGAGGTCATGATTGAGCA
CGCGCAGATGGAGGAGCGTGTGCTTTTTCCACTTCTCGAAACGGCTGAGAGAGGGCTGTGTAAAGCTGCAAATGAGGAGCATGGAAGGGACCTACCCATC
ATGAATGGAATCAGAGAAGACATGAAATCAATTGGAGTTCTAGACACTGGGAGCAATGACTACCGAGAGGCTCTTCGAAACCTTTCCACTCGGCTCAAAT
CATTGCTGGATCATAGCAAAGAGCACTTCCAGGAGGAGGAGCGAGATGTATTACCATTGATGGAGGCTCTGGAACTGGGAAAAGATCAGCAATTGAGGGT
ATTGGAGCAATGTATTGATGTGATGCAAGGGACTCACTCGCATTTGTTCAGCTTTTTTATTGAAGGTCTTCTCCCTCGAGAAGCCATGCAGTACCTGGAT
TTGATTACAAGGTGTAAAGAGGAAAAACTCGTGGCCTCCATGCTTCGCAGGATTATTGAGTAG
AA sequence
>Potri.010G239700.1 pacid=42798975 polypeptide=Potri.010G239700.1.p locus=Potri.010G239700 ID=Potri.010G239700.1.v4.1 annot-version=v4.1
MGNCFTSSKQSMAELAPCDFIKSTPAVQLYGDPTSSFTLYLHLALLYKTRALQFTPTNDPIPVVQFGPETVSGPREMMVRFIDVKLPQPPLMVVVEEGGE
TAALVVKMVAMQHRSVVWHLERMVWWSEDLVTRGGKKNGDPTMGSARMEVRKFGKSYSQLLEVMIEHAQMEERVLFPLLETAERGLCKAANEEHGRDLPI
MNGIREDMKSIGVLDTGSNDYREALRNLSTRLKSLLDHSKEHFQEEERDVLPLMEALELGKDQQLRVLEQCIDVMQGTHSHLFSFFIEGLLPREAMQYLD
LITRCKEEKLVASMLRRIIE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G54290 unknown protein Potri.010G239700
[exp]
0 1
AT4G08320 TPR8 tetratricopeptide repeat 8, Te... Potri.005G177400
[exp]
8.66 0.7980
Potri.012G100001
[exp]
9.38 0.8247
AT3G06350 EMB3004, MEE32 MATERNAL EFFECT EMBRYO ARREST ... Potri.013G029800
[exp]
17.66 0.7624 DHQD2
AT2G35550 BBR_BPC BPC7, BBR/BPC7,... basic pentacysteine 7 (.1.2.3.... Potri.001G133900
[exp]
19.05 0.7489
AT1G04520 PDLP2 plasmodesmata-located protein ... Potri.002G257300
[exp]
29.51 0.7469
AT3G26020 Protein phosphatase 2A regulat... Potri.008G180000
[exp]
31.85 0.7632
AT4G21570 Protein of unknown function (D... Potri.001G405700
[exp]
33.94 0.7291
AT5G53420 CCT motif family protein (.1.2... Potri.015G014000
[exp]
36.00 0.7389
AT4G36490 ATSFH12 SEC14-like 12 (.1) Potri.005G119700
[exp]
36.24 0.7047
AT5G39710 EMB2745 EMBRYO DEFECTIVE 2745, Tetratr... Potri.009G105600
[exp]
39.87 0.7647

Potri.010G239700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.