Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38710 345 / 2e-122 AMMECR1 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G019200 [exp] 402 / 6e-145 AT2G38710 336 / 6e-119 AMMECR1 family (.1.2) Potri.008G019325 [exp] 190 / 3e-62 AT2G38710 176 / 1e-56 AMMECR1 family (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029751 [exp] 387 / 1e-138 AT2G38710 359 / 8e-128 AMMECR1 family (.1.2) Lus10029754 [exp] 387 / 1e-138 AT2G38710 359 / 8e-128 AMMECR1 family (.1.2) Lus10042783 [exp] 385 / 6e-138 AT2G38710 360 / 2e-128 AMMECR1 family (.1.2) Lus10029750 [exp] 229 / 4e-77 AT2G38710 219 / 2e-73 AMMECR1 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01871 [poplar] [flax] AMMECR1 AMMECR1
Representative CDS sequence Show only first row Show all	>Potri.010G240000.2 pacid=42798264 polypeptide=Potri.010G240000.2.p locus=Potri.010G240000 ID=Potri.010G240000.2.v4.1 annot-version=v4.1 ATGGTGGCGGCAAACAGGGAAATGGCTGTGTACTGTTTCGATACTCTTGTTGCTCACTACAACTCTGATGATGCTCCTCCTGCTGCTTTTGACGAGGGTC AACACCCATTGTTTGTCACTTGGAAGAAAGTTGTCAACGGAGGTGAGCCTCGTTTACGTGGATGCATTGGGACTTTGGAAGCTCGATACTTGGTTAATGG ATTCCGGGACTATGCTTTAACAAGTGCTTTGAGGGACCGCAGATTCCCTCCTATACAAGCTAAAGAATTGCCTACTCTGGAATGCACAGTTTCCATTCTG ACTAATTATGAAACTGCTAACAACTATCTTGATTGGGAGGTTGGGACACATGGTTTGATTATTGAGTTTACCGATCCTAATAACAATGTTAGGCGAAGTG CCACTTATTTGCCTGAAGTGGCTGCCCATGAAGGCTGGACAAAAGAGGAGGCAATTGATTCACTGATGCGCAAAGCTGGCTACAGTGGCCACATTACTGA GTCACTTCGAAAGTCTATACAAGTGACTCGTTACCAGAGCACATTATTTACTTTGACCTACAGTGATTATGTCTCCTATGTCAGGGCAACCAGGGGTGCA GCCCCGGCTATTAATGGGGTGAAGCCCGGCAACCATTGA
AA sequence Show only first row Show all	>Potri.010G240000.2 pacid=42798264 polypeptide=Potri.010G240000.2.p locus=Potri.010G240000 ID=Potri.010G240000.2.v4.1 annot-version=v4.1 MVAANREMAVYCFDTLVAHYNSDDAPPAAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARYLVNGFRDYALTSALRDRRFPPIQAKELPTLECTVSIL TNYETANNYLDWEVGTHGLIIEFTDPNNNVRRSATYLPEVAAHEGWTKEEAIDSLMRKAGYSGHITESLRKSIQVTRYQSTLFTLTYSDYVSYVRATRGA APAINGVKPGNH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38710			AMMECR1 family (.1.2)		Potri.010G240000 [exp]	0	1
AT5G66760		SDH1-1	succinate dehydrogenase 1-1 (....		Potri.007G026400 [exp]	3.16	0.7407	Pt-SDH1.1
AT5G13420			Aldolase-type TIM barrel famil...		Potri.001G068200 [exp]	7.34	0.7010
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.007G030900 [exp]	10.81	0.6193	RCE1.1
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Potri.008G030700 [exp]	15.87	0.6308
AT1G34390	ARF	ARF22	auxin response factor 22 (.1)		Potri.015G016700 [exp]	18.22	0.5591
AT1G25520			Uncharacterized protein family...		Potri.010G128400 [exp]	18.33	0.6497
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Potri.001G338400 [exp]	19.74	0.6881	SDH2.1
AT3G02360			6-phosphogluconate dehydrogena...		Potri.017G106900 [exp]	24.00	0.6597	GND.2
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Potri.017G110700 [exp]	28.77	0.6973
AT5G42000			ORMDL family protein (.1.2)		Potri.003G144600 [exp]	30.04	0.6851

Compare expression of checked genes

Potri.010G240000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.