Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19330 311 / 7e-104 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) AT3G19250 261 / 1e-84 Protein of unknown function (DUF677) (.1) AT3G49070 100 / 2e-23 Protein of unknown function (DUF677) (.1) AT1G20180 66 / 2e-11 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G147400 [exp] 118 / 9e-30 AT3G49070 253 / 1e-80 Protein of unknown function (DUF677) (.1) Potri.005G193000 [exp] 113 / 4e-28 AT1G20180 155 / 8e-44 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.002G067300 [exp] 110 / 3e-27 AT1G20180 130 / 2e-34 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.005G243800 [exp] 93 / 8e-21 AT1G20180 252 / 2e-80 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.002G018200 [exp] 82 / 4e-17 AT1G20180 288 / 2e-94 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031977 [exp] 346 / 3e-117 AT3G19330 284 / 2e-93 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10035125 [exp] 192 / 1e-59 AT3G19330 183 / 1e-56 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10005612 [exp] 82 / 6e-17 AT1G20180 268 / 1e-86 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10039258 [exp] 77 / 4e-16 AT3G49070 168 / 1e-50 Protein of unknown function (DUF677) (.1) Lus10017286 [exp] 69 / 9e-13 AT1G20180 265 / 1e-85 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10010144 [exp] 59 / 2e-09 AT1G20180 260 / 4e-83 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10017348 [exp] 56 / 2e-08 AT1G20180 255 / 4e-81 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10028573 [exp] 50 / 6e-07 AT3G49070 102 / 4e-25 Protein of unknown function (DUF677) (.1) Lus10040334 [exp] 49 / 5e-06 AT2G18630 429 / 4e-150 Protein of unknown function (DUF677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF05055 [poplar] [flax] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Potri.010G240200.1 pacid=42797062 polypeptide=Potri.010G240200.1.p locus=Potri.010G240200 ID=Potri.010G240200.1.v4.1 annot-version=v4.1 ATGATGCAGTGCCTCTCTCTCAAAACATATTCAGCAGCATCCACAACACACTCACCACCCCCAACCAACGGTGATTATAACTGCCCTCCGGCTTCGCAAG CTGGGAACTCTGCGGATGGAACACCAAGATCAAGCACACAGCCATCCCCTACTGTTAACCTCACTCGCGAATACACCATCGCTGTCCAGACCAATTCCTA TAACGAGATGTGGTCCAGGATTCATAATGACGAAGCTCAAATTGAAGAAATTCATGATCATTACAATGAGGAGGATGCTAACCGCTTGCTTATGACTCAA GTTCTTCAACCAAATCGAGAATGTGTGGAAGAAGCTCTTCGTGACGCCAAGCCTAACACTCTCACTCGACTCGTATCCACCTACTTTGTCAACAGCGAAA ACACTAGCCAACTCTGCATTCTTCTCCAACAGAGTGTTTATCGTGCCCGTGCTCTTTATGGTCCTCTTCATAAACTTCTGGATGTTATTCCTACTGACTC AGAATCCCTGTCTCAATCACAATGCGATTGTGCTTTTGATGTCTTTCTCCAATTTGATCGCGTTGGCAACCCTTTCCCTTGCCCCGAATCGCATAACTTT AATGAAATGCAGCAGTGCTTTTCGCAACTGAAGCAGCAACTAGAACGGCGAATCCGCAAGTCACGCTCTAGAATCCACCTAGTTCGCCGAGCCACTTTTG GCTCTGCCCTTTGCGTCATTGGCTCTGTTGTTGCTGTTGTAGTATCTGCTGTGGGAATCGCAAGTCATGCATTTGTTGCCATTGCTGCCACCCCGATATG CACACTGCCGTGTCTCCCTCGCCGCTTGACTAAGAAAGAGCTTGCCCGTGTCGAGCAACTTGATTCTGCTTCTAGGGGTACATATGTGCTGAACAATCAA CTTGCTACCCTTGAACGGCGTGTTGCTCGTTTGTATGATGCTGTCGAGTGTGATAAGCATCTTATTCAGATTGGATTGGAGAGCGGTAATGACTTGCATC CCATTTCAGAGGTTTTGAAACAGCTTAAAAAGAACCATCTCAATTTCATTGAACAGCTCAAGGATCTCGAGGAGCATATATGCCTTTGTTTTAATGCTGT CAATAGGGCCAGAGGTCTGCTTCTTCACGAGATCCATCGCCATCAAATTTCTACTTCCTAA
AA sequence Show only first row Show all	>Potri.010G240200.1 pacid=42797062 polypeptide=Potri.010G240200.1.p locus=Potri.010G240200 ID=Potri.010G240200.1.v4.1 annot-version=v4.1 MMQCLSLKTYSAASTTHSPPPTNGDYNCPPASQAGNSADGTPRSSTQPSPTVNLTREYTIAVQTNSYNEMWSRIHNDEAQIEEIHDHYNEEDANRLLMTQ VLQPNRECVEEALRDAKPNTLTRLVSTYFVNSENTSQLCILLQQSVYRARALYGPLHKLLDVIPTDSESLSQSQCDCAFDVFLQFDRVGNPFPCPESHNF NEMQQCFSQLKQQLERRIRKSRSRIHLVRRATFGSALCVIGSVVAVVVSAVGIASHAFVAIAATPICTLPCLPRRLTKKELARVEQLDSASRGTYVLNNQ LATLERRVARLYDAVECDKHLIQIGLESGNDLHPISEVLKQLKKNHLNFIEQLKDLEEHICLCFNAVNRARGLLLHEIHRHQISTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19330			Protein of unknown function (D...		Potri.010G240200 [exp]	0	1
					Potri.011G062950 [exp]	2.23	0.9093
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.017G017800 [exp]	4.47	0.8717
AT1G77290			Glutathione S-transferase fami...		Potri.005G182000 [exp]	4.47	0.8859
AT4G12640			RNA recognition motif (RRM)-co...		Potri.014G171900 [exp]	5.00	0.8832
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Potri.007G027600 [exp]	11.74	0.8810
AT2G42450			alpha/beta-Hydrolases superfam...		Potri.002G041000 [exp]	12.12	0.8135
					Potri.018G013850 [exp]	13.56	0.8155
					Potri.011G062401 [exp]	13.56	0.8768
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Potri.018G128200 [exp]	13.74	0.8007
AT1G79060			unknown protein		Potri.007G065200 [exp]	14.07	0.8725

Compare expression of checked genes

Potri.010G240200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.