Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04200 123 / 6e-35 RmlC-like cupins superfamily protein (.1) AT1G09560 122 / 8e-35 GLP5 germin-like protein 5 (.1) AT1G02335 122 / 9e-35 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT3G62020 121 / 4e-34 GLP10 germin-like protein 10 (.1.2) AT4G14630 120 / 5e-34 GLP9 germin-like protein 9 (.1) AT5G38910 120 / 6e-34 RmlC-like cupins superfamily protein (.1) AT5G38930 117 / 2e-32 RmlC-like cupins superfamily protein (.1) AT5G38960 116 / 2e-32 RmlC-like cupins superfamily protein (.1) AT1G18980 115 / 4e-32 RmlC-like cupins superfamily protein (.1) AT1G18970 115 / 8e-32 GLP4 germin-like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G016700 [exp] 333 / 8e-118 AT1G18980 122 / 6e-35 RmlC-like cupins superfamily protein (.1) Potri.010G240700 [exp] 259 / 7e-89 AT1G02335 141 / 4e-42 germin-like protein subfamily 2 member 2 precursor (.1) Potri.008G084300 [exp] 250 / 4e-85 AT1G02335 147 / 3e-44 germin-like protein subfamily 2 member 2 precursor (.1) Potri.010G240600 [exp] 245 / 5e-83 AT3G62020 112 / 3e-31 germin-like protein 10 (.1.2) Potri.004G194600 [exp] 243 / 2e-82 AT3G62020 129 / 4e-37 germin-like protein 10 (.1.2) Potri.009G157100 [exp] 240 / 3e-81 AT1G09560 105 / 3e-28 germin-like protein 5 (.1) Potri.013G116500 [exp] 167 / 9e-53 AT1G18970 70 / 1e-14 germin-like protein 4 (.1) Potri.013G000500 [exp] 136 / 4e-40 AT1G09560 311 / 1e-108 germin-like protein 5 (.1) Potri.005G001300 [exp] 124 / 2e-35 AT3G62020 309 / 5e-108 germin-like protein 10 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020631 [exp] 236 / 9e-80 AT3G10080 132 / 7e-39 RmlC-like cupins superfamily protein (.1) Lus10004857 [exp] 235 / 2e-79 AT1G02335 140 / 4e-42 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004854 [exp] 228 / 2e-76 AT1G02335 137 / 2e-40 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004855 [exp] 227 / 5e-76 AT1G02335 129 / 3e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004856 [exp] 219 / 6e-73 AT1G02335 129 / 3e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10020632 [exp] 214 / 4e-71 AT1G02335 129 / 1e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10034191 [exp] 210 / 5e-69 AT1G18970 136 / 4e-40 germin-like protein 4 (.1) Lus10004858 [exp] 194 / 8e-63 AT1G02335 123 / 7e-35 germin-like protein subfamily 2 member 2 precursor (.1) Lus10043393 [exp] 188 / 1e-60 AT1G18970 123 / 3e-35 germin-like protein 4 (.1) Lus10038014 [exp] 129 / 3e-37 AT3G62020 327 / 5e-115 germin-like protein 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF07883 [poplar] [flax] Cupin_2 Cupin domain
Representative CDS sequence Show only first row Show all	>Potri.010G240500.1 pacid=42797281 polypeptide=Potri.010G240500.1.p locus=Potri.010G240500 ID=Potri.010G240500.1.v4.1 annot-version=v4.1 ATGAACTCTCTCAAACCAGTTTCCCTTTCTCTATTCTTACTTTCCTTAGTCAGTGCAGTCAATATGGTCTTCGCAAGTGATCCTGATATCCTTTCGGATT TCGTCGCACCAACTAACACTATCGTTGATGGAAAGTTCTTCACCTACACAGGAATGCGTGGGGTTCTTGCCAAATTTCCTCAAAACTTCACTTTAACAAA AGCTACCATGAATGAGTTCCCAGCTCTTAACGGGCAGAGTGTGTCATATGCTGTGCTTCAATACCCTGCAGGTAGTCTCAACCCTCCTCATACCCACCCT CGAGCTGCCGAGCTCTTGTTCCTTGTGTATGGTAGCTTGGATGTTGGATTTGTTGACACCAAGAATGTGCTTTACACCCAAAAACTCCAAGTTGGAGATA TGTTCATTTTCCCAAAGGGTCTGGTACACTATCAGTCCAACCCAACCAAAGAACCAGCTGTTGCGATTTCTTCTTTTGGTAGTGCAAATGCCGGAACAGT TTCTGTGCCGTTGGCTGTCTTTTCAACAGGAATTGATGATGGAATTCTTGCCAAAGCATTCAAGACCGATGTTTATACCATTCAAAAGATCAAGTCCGGC TTTGGCAAGCCCTGA
AA sequence Show only first row Show all	>Potri.010G240500.1 pacid=42797281 polypeptide=Potri.010G240500.1.p locus=Potri.010G240500 ID=Potri.010G240500.1.v4.1 annot-version=v4.1 MNSLKPVSLSLFLLSLVSAVNMVFASDPDILSDFVAPTNTIVDGKFFTYTGMRGVLAKFPQNFTLTKATMNEFPALNGQSVSYAVLQYPAGSLNPPHTHP RAAELLFLVYGSLDVGFVDTKNVLYTQKLQVGDMFIFPKGLVHYQSNPTKEPAVAISSFGSANAGTVSVPLAVFSTGIDDGILAKAFKTDVYTIQKIKSG FGKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04200			RmlC-like cupins superfamily p...		Potri.010G240500 [exp]	0	1
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.010G240600 [exp]	1.00	0.9583	Pt-GER2.19
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Potri.014G069500 [exp]	1.73	0.9376
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Potri.008G137600 [exp]	4.00	0.9426
					Potri.019G017302 [exp]	4.47	0.9157
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G137800 [exp]	11.61	0.8460
					Potri.006G021800 [exp]	12.00	0.8708
					Potri.012G096050 [exp]	15.87	0.8024
AT4G22530			S-adenosyl-L-methionine-depend...		Potri.007G101800 [exp]	15.96	0.8006
AT2G23140			RING/U-box superfamily protein...		Potri.006G251000 [exp]	23.74	0.8375
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Potri.001G193200 [exp]	26.53	0.9284

Compare expression of checked genes

Potri.010G240500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.