Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04780 574 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 355 / 2e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G50270 345 / 6e-112 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14850 347 / 2e-111 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 340 / 4e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 339 / 1e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G03880 337 / 2e-108 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 337 / 7e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 334 / 3e-106 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G52630 330 / 3e-106 MEF1 mitochondrial RNAediting factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 382 / 2e-122 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G095100 [exp] 369 / 6e-120 AT5G50390 865 / 0.0 EMBRYO DEFECTIVE 3141, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G208000 [exp] 364 / 2e-118 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 367 / 3e-117 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 361 / 6e-117 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G053500 [exp] 357 / 2e-116 AT5G52630 785 / 0.0 mitochondrial RNAediting factor 1 (.1) Potri.004G059400 [exp] 364 / 4e-116 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086900 [exp] 354 / 2e-114 AT4G14850 964 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 352 / 6e-114 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034715 [exp] 647 / 0 AT5G04780 676 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029436 [exp] 356 / 5e-115 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 355 / 8e-112 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 355 / 9e-112 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006123 [exp] 346 / 3e-111 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011323 [exp] 343 / 7e-111 AT5G52630 790 / 0.0 mitochondrial RNAediting factor 1 (.1) Lus10014594 [exp] 347 / 2e-110 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 343 / 2e-110 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012206 [exp] 342 / 3e-110 AT5G52630 786 / 0.0 mitochondrial RNAediting factor 1 (.1) Lus10022702 [exp] 337 / 1e-109 AT3G11460 641 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.010G241100.1 pacid=42799859 polypeptide=Potri.010G241100.1.p locus=Potri.010G241100 ID=Potri.010G241100.1.v4.1 annot-version=v4.1 ATGAATACATTTAGGATCTTTTGCAACAAGAAGAGATTCAGTGAAAATTTTATTGTTTACCGTAAACACTTCTGTTCCTTAGGTAACGCTACCAAAAAAC CTGAAATTATAACTCAACAAGACTTTTTCTTTGACGCCACCAAAGTATTAAAGTTGCATTCTTTACTACAATTCTGTGCAAAAAATCGAGAACCCATTAC AGGTAAGGCCTGCCATGGACAAGTGATTCGATTGGGGTTAGAAACAGATACCTTAACATCAAATATGTTGATGAATATGTACTCGAAATGTGGTCTAATT CGTCGTGCTTGTAAGGTGTTTGATGAAATACCTGAGAGAAGTATGGTTTCATGGAATATAATGATCGGTACTTGTGTACAGAATGGAGAGGAGGAAAAGG CTATCGACATTTTCTTGGAAATGCAAAGAGAAGGAAGCCCATGCAGCGAATTCACGGTTTCTAGTGTTGTTTGTGCTTGTGCTGCTAAAGGTGACGTCTT TTTCTGTAGGCAGTTGCATGCCTTTGCTATCAAGGCTGTGGTGGATGCTGATGTTTTTGTGGGTACTGCATTGATTGATGTTTATGCAAAATGTGGGTCG ATTGAAGATGCAAGTTGTGTTTTTGAAGGGATGCCTGAGAGGAATGATGTTACGTGGAGTTCAATAGTGGCAGGGTTTGTGCAAAATGAACTTTATGAAG AGGGCTTGGTGTTGTTTGCTAGAGGGAAGGAAATGGGGCTTGAAAATAATCAGTTTATGATATCATCCGTTATTAGGGCTTGTGCAGGGTTGGCAGCTTT GATTGAAGGGAGGCAGGTGCATGCTATTGTTTGTAGAACTGGTTTTGGTCCGAATAATTTTGTTGCTTCCGCTCTTGTAGACATGTATGCCAAATGTGGT AGCATAGAAGAGGCTTATGTTTTGTTTTGTAATATAGAGAAAAAGAATGTTGTCTTGTGGAATGCTATAATTTCCGGGTTTGCTAAACATGCTTGCTCTT CGGAAGTGATGAACTTATTCGAGGAAATGCAGCAGACGGGTATGCAACCGGATGAAGTGACTTATGTTGCAGTATTATCCGCATGTGTTCATGTAGGTTT GGTGGACAAGGGACGAAGCTATTTCGACCTTATGACAAGAGAGCACAACGTGTCACCAAATGTCCTTCATTATTCATGCATGGTTGATATTCTTGGCAGG GGAGGACTGGTTCATGAAGCTCATGAGTTGATGACGAAAATGCCATTTGCTGCTACTGCTTCAATGTGGGGATCACTTTTGGCCTCTTGCAGGATTCATG GGAATCTTGAATTAGCTGAGATTGCAGCTAAGAACTTGTTCGAGATGGAACCTGACCGTGGAGGAAACTATGTTCTACTGGCAAACACATACGCTGCTAG TAAAAAGTGGGAGGAAGCTGCAAAAGCAAGGAAGTCCCTCAAGGGGAGTGAGATCTTGAAGGAGAGGGGCAAGAGTTGGATCGAAATTAAGGACAAAGTT CACACTTTTATGGCTGGCGAGAGAACCCATCCTAGAATAACTGATATATATTTAGAGTTGAATAACTTGCTAGAAGAGATGACTAAATTAGTTAATAAAG CTGAGACCGACTTTGACCTTCATGATCTCTAA
AA sequence Show only first row Show all	>Potri.010G241100.1 pacid=42799859 polypeptide=Potri.010G241100.1.p locus=Potri.010G241100 ID=Potri.010G241100.1.v4.1 annot-version=v4.1 MNTFRIFCNKKRFSENFIVYRKHFCSLGNATKKPEIITQQDFFFDATKVLKLHSLLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLI RRACKVFDEIPERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQLHAFAIKAVVDADVFVGTALIDVYAKCGS IEDASCVFEGMPERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCG SIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGR GGLVHEAHELMTKMPFAATASMWGSLLASCRIHGNLELAEIAAKNLFEMEPDRGGNYVLLANTYAASKKWEEAAKARKSLKGSEILKERGKSWIEIKDKV HTFMAGERTHPRITDIYLELNNLLEEMTKLVNKAETDFDLHDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04780			Pentatricopeptide repeat (PPR)...		Potri.010G241100 [exp]	0	1
AT3G25970			Pentatricopeptide repeat (PPR)...		Potri.007G146800 [exp]	2.00	0.9311
AT1G69350			Tetratricopeptide repeat (TPR)...		Potri.008G093000 [exp]	2.44	0.9329
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.006G105700 [exp]	5.29	0.9013
AT5G08310			Tetratricopeptide repeat (TPR)...		Potri.005G090600 [exp]	5.74	0.9149
AT1G18450		ATARP4	actin-related protein 4 (.1)		Potri.012G061300 [exp]	5.91	0.9009	ARP901,ARP4.2
AT3G56550			Pentatricopeptide repeat (PPR)...		Potri.016G029500 [exp]	10.95	0.8882
AT1G03100			Pentatricopeptide repeat (PPR)...		Potri.005G212400 [exp]	11.00	0.8916
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G083900 [exp]	11.83	0.8991
AT5G52850			Pentatricopeptide repeat (PPR)...		Potri.004G071800 [exp]	12.24	0.8930
AT2G37320			Tetratricopeptide repeat (TPR)...		Potri.016G082200 [exp]	13.41	0.8633

Compare expression of checked genes

Potri.010G241100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.