Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04810 1230 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G39710 230 / 7e-64 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 222 / 5e-61 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 219 / 7e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 219 / 9e-61 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 216 / 3e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 221 / 5e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 216 / 8e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 215 / 2e-59 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G61990 219 / 5e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G017400 [exp] 1525 / 0 AT5G04810 1278 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G025600 [exp] 244 / 3e-69 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 239 / 4e-67 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G250700 [exp] 236 / 2e-65 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 233 / 5e-65 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G249800 [exp] 234 / 6e-65 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.015G105400 [exp] 234 / 5e-64 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 229 / 5e-64 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G139300 [exp] 230 / 9e-64 AT5G01110 275 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034149 [exp] 1240 / 0 AT5G04810 1157 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10043434 [exp] 1203 / 0 AT5G04810 1108 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10008969 [exp] 1181 / 0 AT5G04810 1121 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10028850 [exp] 706 / 0 AT5G04810 689 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10028851 [exp] 357 / 5e-115 AT5G04810 312 / 3e-98 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10007468 [exp] 244 / 4e-69 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019524 [exp] 233 / 2e-64 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008650 [exp] 233 / 3e-64 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012328 [exp] 226 / 3e-62 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 226 / 4e-61 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.010G241300.1 pacid=42799511 polypeptide=Potri.010G241300.1.p locus=Potri.010G241300 ID=Potri.010G241300.1.v4.1 annot-version=v4.1 ATGGATATTTCGCCACTCTCCACCACCCCACGCTTCCCTCATTCTCCCACTCCCTTCTCCTCCATCGCCACCACAACCATTTCTTTCTCCCTCAAACCAA CACCTCCACCACCACCAGAACCCACCAATTCTTCCTCTATTCGCCGTCCCAAATCACTCACTCCAACACCCTCCACCAGCTCCACCCCAACCCCAACCAC CCCTAAATTCCCCAAGAACCCTCTCAAAACCCTCCTCAACCCCTCCAAACCCTCAGTAACAAGCACCACCACCACCAACCCTCTTTCTCTCTCCACCAAA CTCCGCCTCTCCAGCAAACTCTCGCCCCCTCCTCCTCCACCACCACCGCCGCCGCCGCTTGAAATACTTCAAACCCCAGAAGCTGAAACCCAAGAAAAGA CTCAAAAGATAGAAAATGAAGCCCCCAGAATTGAATTCTACCAAAATGGGAAGATCTTTATAGGAAATTTACCAAACTGGATAAAAAAACATGAACTTTC TGAATTCTTCAGTCAATTCGGGCCTATAAAGAATGTAATTTTGATCCAGAGTCATAATGAGACTGAAAGGAATGCGGGGTTTGGGTTTATTATCTATGAT GGTCCAAAAGCAGGGAAGTCTGCAATGAAAGCTGAGGAATTTGATGGAATGGAGTTTCATGGGAGGGTTTTGACTGTGAAATTGGATGATGGGAGAAGAT TGAAAGCGAAAGCAGAGGAGAGAAAGAATTGGGTTTATGGAGAGGATGGAAAAGATTATAGGTCTAAATGGCATGAAGAAAGAGAAGGGTCTACAAAGGC TTTTCGGAAGGTTTTAGACACGCAACCGGAGAATTGGCAGGCAGTTGTTAGTGCTTTCGAAAGGATTAAGAAGCCTTCTAGAAGGGAGTTTGGATTAATG GTGGGGTACTATGCAAGGCGAGGGGATATGCATCGTGCACGACAAACTTTTGAGAGCATGCGAGCAAGGGGAATAGATCCCAGCTCACATGTCTATACGA GCCTTATTCACGCTTATGCAGTTGGTAGAGACATGGAAGAAGCACTGTCTTGTGTTAGGAAAATGAATGAAGAGGGCATTGAAATGAGTCTGGTGACTTA TAGCATAGTTGTCGGAGGATTTGCCAAATTCGGCAATGCTGAAGCTGCAGATTGCTGGTTTAAGAAGGCCAAAGAGAGGCATACGAATTTGAATGCATAC ATTTATGGGAACATTATATACGCTTATTGTCAGGCATGCAATATGGATCGAGCTGAAGCTCTGGTGAGAGAGATGGAAGAAGAAGGTATAGATGCTCCTC TTGACATATATCATACCATGATGGATGGTTACACTATGATTAGAAATGAAGAAAAATGTCTTATTGTATTCAAAAGGCTTAAGGAATGTGGATTTGCTCC TTCAGTGATCACCTATGGATGTCTCATCAATATGTACACCAAGATTGGTAAAGTTTCTAAAGCCCTGGAGGTTAGCAAAATGATGAAATCTGTTGGCATA AAGCATAACATGAAGACATATTCCATGTTGATCAACGGGTTCTTGAAGTTAAAAGATTGGACCAATGCATTTGCAGTTTTCGAAGATGTTATCAAAGATG GTTTGAAACCTGATGTTGTCCTCTATAATAACATTATCAAAGCTTTCTGTGGAATGGGAAATATGGATCGTGCCATCCATATGGTGAAGGAAATGCAGAA GGAAAGATGTAGGCCTACATCACGCACATTTATGCCCATTATACATGGATTTGCAAGAGCTGGAGAAATGAGGAGGGCCCTAGAAATTTTTGATATGATG AGGCGGAGTGGGTGCATCCCAACTGTGCATACCTTCAATGCTTTGGTTCTTGGCCTTGTTGAGAAGCGCAAGATGGAGAAGGCTGTTGAAATATTGGATG AGATGGCACTGGCAGGTGTAAGTCCAGATGAACACACATACACGACAATCATGCATGGTTATGCAGCATTAGGTGATACTGGAAAGGCCTTCGAGTATTT TACCAAAATGAGAAATGAAGGACTACAGCTTGATGTATTTACATACGAGGCACTGCTCAAGGCGTGTTGCAAGTCAGGCAGGATGCAAAGTGCTTTAGCA GTTACTCGAGAAATGAATGCTCAAAAGATTCCAAGAAACACCTTTGTCTATAACATATTAATTGATGGATGGGCTCGAAGAGGTGATATTTGGGAGGCTG CTGACCTTATGCAGCAAATGAATCAAGAAGGGGTTCAACCTGATATTCATACCTACACATCTTTTATAAATGCTTGTTGCAAGGCTGGAGATATGCTGAG AGCAACAAAAACAATGGAAGAAATGGAAGCTGCAGGGGTGAAGCCAAATGTGAAAACCTACACCACGTTGATTCATGGGTGGGCAAATGCTTCTCTTCCA GAAAAGGCTTTGAGCTGCTTCGAAGAGTTGAAGTTGGCCGGATTAAAGCCTGATAAAGCTGTGTACCATTGCTTAATGACATCATTGCTGTCAAGGGCTA CTGTTGCTGAAGCATACATTTACTCGGGGATACTGTCCATTTGTAGAGAGATGATAGAGTTTGAGTTGACTGTAGATATGGGGACTGCAGTTTACTGGTC CAAGTGTTTACGCAAGATTGAAAGAATAGGTGGAGAGCTTACACAGACCTTGCAGAAGACCTTCCCTCCTGATTGGAACGCACATCATTCTCTCGAGGCT AACCACGAATCAGATATCAATGATGAACCCAGCATTCATGGTGATAATGACATGTTTTTGGCTGGTGTGAATGATGGAGATGGCGATGATGAGGATGATG ATCATCATTATCGCAAGGGTTTTAACCAAAGACTGTGGGTCTAA
AA sequence Show only first row Show all	>Potri.010G241300.1 pacid=42799511 polypeptide=Potri.010G241300.1.p locus=Potri.010G241300 ID=Potri.010G241300.1.v4.1 annot-version=v4.1 MDISPLSTTPRFPHSPTPFSSIATTTISFSLKPTPPPPPEPTNSSSIRRPKSLTPTPSTSSTPTPTTPKFPKNPLKTLLNPSKPSVTSTTTTNPLSLSTK LRLSSKLSPPPPPPPPPPPLEILQTPEAETQEKTQKIENEAPRIEFYQNGKIFIGNLPNWIKKHELSEFFSQFGPIKNVILIQSHNETERNAGFGFIIYD GPKAGKSAMKAEEFDGMEFHGRVLTVKLDDGRRLKAKAEERKNWVYGEDGKDYRSKWHEEREGSTKAFRKVLDTQPENWQAVVSAFERIKKPSRREFGLM VGYYARRGDMHRARQTFESMRARGIDPSSHVYTSLIHAYAVGRDMEEALSCVRKMNEEGIEMSLVTYSIVVGGFAKFGNAEAADCWFKKAKERHTNLNAY IYGNIIYAYCQACNMDRAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGI KHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMM RRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALA VTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWANASLP EKALSCFEELKLAGLKPDKAVYHCLMTSLLSRATVAEAYIYSGILSICREMIEFELTVDMGTAVYWSKCLRKIERIGGELTQTLQKTFPPDWNAHHSLEA NHESDINDEPSIHGDNDMFLAGVNDGDGDDEDDDHHYRKGFNQRLWV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04810			pentatricopeptide (PPR) repeat...		Potri.010G241300 [exp]	0	1
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.008G014100 [exp]	4.12	0.8709
AT4G39680			SAP domain-containing protein ...		Potri.005G080500 [exp]	9.38	0.8292
					Potri.014G023301 [exp]	9.48	0.7956
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.008G047700 [exp]	12.36	0.8318
AT1G77800			PHD finger family protein (.1....		Potri.002G089400 [exp]	13.19	0.8339
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Potri.015G041500 [exp]	13.74	0.8055
AT1G72390			unknown protein		Potri.003G069200 [exp]	14.31	0.8255
AT2G15980			Tetratricopeptide repeat (TPR)...		Potri.004G149400 [exp]	16.12	0.7819
AT1G43770			RING/FYVE/PHD zinc finger supe...		Potri.005G173200 [exp]	17.32	0.7382
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.009G144800 [exp]	19.26	0.8207

Compare expression of checked genes

Potri.010G241300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.