Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52490 641 / 0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G29920 305 / 1e-89 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57710 296 / 2e-86 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57130 293 / 7e-85 Clp amino terminal domain-containing protein (.1) AT4G30350 241 / 2e-67 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT2G40130 136 / 9e-34 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G29970 136 / 1e-32 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT1G07200 132 / 2e-31 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G74310 75 / 2e-13 HOT1, ATHSP101 heat shock protein 101 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G017600 [exp] 1422 / 0 AT3G52490 635 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G204500 [exp] 790 / 0 AT3G52490 852 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G071800 [exp] 741 / 0 AT3G52490 785 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G140900 [exp] 342 / 1e-102 AT5G57130 751 / 0.0 Clp amino terminal domain-containing protein (.1) Potri.006G073800 [exp] 332 / 3e-99 AT4G29920 693 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G097300 [exp] 271 / 5e-77 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G175200 [exp] 268 / 3e-76 AT5G57710 913 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G069100 [exp] 153 / 9e-38 AT2G29970 610 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G252500 [exp] 142 / 3e-34 AT2G29970 668 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028849 [exp] 634 / 0 AT3G52490 498 / 5e-165 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008970 [exp] 558 / 0 AT3G52490 460 / 1e-147 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021291 [exp] 413 / 3e-130 AT3G52490 690 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016966 [exp] 341 / 1e-103 AT3G52490 606 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015511 [exp] 282 / 4e-81 AT5G57710 899 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019984 [exp] 280 / 1e-80 AT5G57710 912 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023201 [exp] 192 / 9e-51 AT5G57710 404 / 1e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10020886 [exp] 148 / 3e-36 AT5G57710 226 / 2e-61 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038320 [exp] 141 / 4e-34 AT2G29970 696 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040206 [exp] 126 / 3e-29 AT2G40130 569 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [poplar] [flax] Clp_N Clp amino terminal domain, pathogenicity island component
Representative CDS sequence Show only first row Show all	>Potri.010G241600.2 pacid=42800295 polypeptide=Potri.010G241600.2.p locus=Potri.010G241600 ID=Potri.010G241600.2.v4.1 annot-version=v4.1 ATGAGGGCTGGAATTTGCAGTGTACAGCAGGCTCTTACTCCCGAGGCTGTTAGTTTAGTGAAACAAGCAGTTGGTCTTGCTAGGCGGCGAGGCCATGCTC AAGTCACTCCTCTTCATGTAGCAAGCACAATGCTTGCTTCCTCTACTGGTCTTCTCAGAAGGGCTTGCCTTCAATCCCACTCTCATCCTCTTCAATGCAA AGCTCTGGAGCTCTGCTTCAATGTGGCGCTTAATCGCCTCCCTGCGTCCACTTCTAGTGCCCTATTAGGCCCTCACTCCTCATACCCTTCCCTCTCCAAT GCCTTGGTTGCGGCCTTTAAGCGTGCTCAGGCTCACCAACGGCGAGGGTCCATCGAAAACCAGCAACAGCCCATTTTAGCTTTGAAAATTGAGATAGAAC AGCTCATTATCTCTATCCTAGATGATCCTAGTGTTAGTAGAGTCATGAAGGAGGCTGGTTTCTCTAGTACTCAAGTGAAAAACAAGGTAGAACAAACTGT TTCTTTGGAGATTTGTCCTCAAAGTTCTCTTACTGTCAGCTGTCAGCCCAAAGAAATCATCAAACCTCAAGTTCTTAGCGCTAGTGTGTCTCAATCTCTA CCTTTCAGTCAGTTTGGAATCATACACAGCAAACCATTAGATCAAGTAAGGAATGATGATGTAATGAGTGTCTTAAACACATTGGTGGGCAAAAAAAGAA ACACTATCATCACAGGAGAGTGCCTGGCTACTGCTGAGAGCGTAGTTAGGGGGGTGATGGACAAGTTTGAGAGAGGGGAGGTTTCTGGGGATTTGAGGTC TGTGAGGTTCAAAAACCTTCCTCTTTTCTCTTTCAGAAGTCTTTCCAAAGAGGACCTTGAACAGAAGCTTATGGAGCTTAGGTGTATTGTGAAGAGCTAT ATAAGCACTGGGGTGGTTTTATATCTGGGTGATCTCAAATGGATAGCTGATTTTTGGTCAAGCTATGGTGAGCAAAGGAGAAGCTACTACTGCACTGCAG ATCACATAATCTTGGAGCTCAAAAGATTAGTTCATGGATTCAGTGAAACGGGAAGGTTGTGGCTTATGGGGATCGCTACTTTCCAAACTTACATGAAGTG TAAAGCAGGCCACCCTTCTCTAGAGACTATGTGGGAACTTAATCCTGTAACAATTCCAGTTGGGAGCCTGAACCTAAGTCTCAAACTCGATAGTGATTCA CAATCTCATCAATCCAGAAGCAAGGCATCTTTGAATGGGTCCAGTTGGCCACTGCTTGAATCTAGAGTTGATAACCACTTAACTTGCTGGACAGATTACT CTGTCAACTTCAATAAAGAAGCTCAAAGCCTAGTAGGTAGGACCCATAACAAGGAATCCACTTCTAGCGTTACTATTTCCAACAATTCAAGCTTGCCGTT ATGGCTCCAGCAGTGCAAAGAAACTGAAAGAAATACAACCAATGACCAGCAGGAATATCTATGCAATAAAGGGATTTCTCTTTTTGGTTCAGTCCACAAA CAGTCCTATTATCCTGAGAAAACCATCAAATTTGCTTCGTCTCCTCCTTCACCGAATTCATTCTCCTCGCAAGAGCGCAACACCGACCCACAACAGACAC ACCTAAGTTGGCCAGTGATTTTTGAACATAAACAGTTTGAAAAGGAGAACCAGATTTGGATTTCAGAATGCAGCAATGAAGGTTATGAAAGCAGTTTGAG AAATGTTCCCAAACCCGACCTTTTGTCAAATCCCAACTCTAGTCCAAATTCAGCTTCTTCAAGTGAGGCAATGGATGATATTGAGGGTGTCCAAAGCTTC AAGGAGTTCAATGACTACAGCTTGAAGAATCTACGTAGTGGCTTGGAGAAGAAGGTTCCATGGCAGAAGGATATCATTCCTGAAATTGCAACCACTATCC TTGAGTGCAGGTCTGGAATGAGGAAAAGGAAAGGAAAGTTGAATCACATAGAAGACAAAGCAGAAACTTGGCTGTTTTTCTTAGGTGTTGATTTTGAAGG TAAAGAAAAGATTGCAAGGGAGCTAGCTAAACTAGTTTTTGGCTCTCAAAGCAACTTTGTATCGATTGGTTTAAGCAATTTCTCCTCATCAAGAGCTGAT TCTATCGAAGAATCCAAAAACAAGAGGGCAAGAGATGAGTTGGGTTGCAGTTATCTTGAGAGACTTGGCCTAGCTTTGAATGAAAATCCTCATCGCGTGT TCTTCATGGAAGATGTGGATCAAGTTGACAACTGTTCTCAAAAGGGTATCAAGCAAGCAATTGAAAATGGAAATGTAACACTTCCTGATGGTGAAAAAGT CCCTCTTAAGGATGCCATTATTATTTTCAGCTGTGAAAGCTGCTGTTCGGTGTCCAGAACATGTTCTCCTCCAAGAAGGCAAAAAACCGGTGACAATCAT GAAGACAAGGAAGATGAGGATGTCATGGAGGAGAAAAGTCTAGTTCTTTCACTTGACCTGAATATTTCCTTTGGCGATAATGGAGATGATCAATGTTCAC TTGCAGAATATGGGATTTTAGAATCTGTGGATAGGCAGGTTGTTTTCAAAATTCAAGAATTAAGTTAG
AA sequence Show only first row Show all	>Potri.010G241600.2 pacid=42800295 polypeptide=Potri.010G241600.2.p locus=Potri.010G241600 ID=Potri.010G241600.2.v4.1 annot-version=v4.1 MRAGICSVQQALTPEAVSLVKQAVGLARRRGHAQVTPLHVASTMLASSTGLLRRACLQSHSHPLQCKALELCFNVALNRLPASTSSALLGPHSSYPSLSN ALVAAFKRAQAHQRRGSIENQQQPILALKIEIEQLIISILDDPSVSRVMKEAGFSSTQVKNKVEQTVSLEICPQSSLTVSCQPKEIIKPQVLSASVSQSL PFSQFGIIHSKPLDQVRNDDVMSVLNTLVGKKRNTIITGECLATAESVVRGVMDKFERGEVSGDLRSVRFKNLPLFSFRSLSKEDLEQKLMELRCIVKSY ISTGVVLYLGDLKWIADFWSSYGEQRRSYYCTADHIILELKRLVHGFSETGRLWLMGIATFQTYMKCKAGHPSLETMWELNPVTIPVGSLNLSLKLDSDS QSHQSRSKASLNGSSWPLLESRVDNHLTCWTDYSVNFNKEAQSLVGRTHNKESTSSVTISNNSSLPLWLQQCKETERNTTNDQQEYLCNKGISLFGSVHK QSYYPEKTIKFASSPPSPNSFSSQERNTDPQQTHLSWPVIFEHKQFEKENQIWISECSNEGYESSLRNVPKPDLLSNPNSSPNSASSSEAMDDIEGVQSF KEFNDYSLKNLRSGLEKKVPWQKDIIPEIATTILECRSGMRKRKGKLNHIEDKAETWLFFLGVDFEGKEKIARELAKLVFGSQSNFVSIGLSNFSSSRAD SIEESKNKRARDELGCSYLERLGLALNENPHRVFFMEDVDQVDNCSQKGIKQAIENGNVTLPDGEKVPLKDAIIIFSCESCCSVSRTCSPPRRQKTGDNH EDKEDEDVMEEKSLVLSLDLNISFGDNGDDQCSLAEYGILESVDRQVVFKIQELS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52490			Double Clp-N motif-containing ...		Potri.010G241600 [exp]	0	1
AT3G52490			Double Clp-N motif-containing ...		Potri.008G017600 [exp]	1.00	0.9745
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.004G223900 [exp]	2.00	0.9594
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Potri.001G073600 [exp]	2.44	0.9400
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Potri.010G205400 [exp]	3.87	0.9365
AT1G64700			unknown protein		Potri.011G153000 [exp]	4.89	0.8938
AT5G06850			C2 calcium/lipid-binding plant...		Potri.016G049300 [exp]	5.47	0.9128
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Potri.003G139200 [exp]	5.65	0.8764
AT4G25835			P-loop containing nucleoside t...		Potri.009G024400 [exp]	6.00	0.8490
AT5G17980			C2 calcium/lipid-binding plant...		Potri.013G055500 [exp]	6.32	0.9026
AT4G14740			Plant protein of unknown funct...		Potri.010G082400 [exp]	8.12	0.8267

Compare expression of checked genes

Potri.010G241600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.