Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03540 989 / 0 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52340 907 / 0 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G52350 557 / 0 ATEXO70A3 exocyst subunit exo70 family protein A3 (.1) AT5G50380 354 / 6e-113 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT3G14090 333 / 2e-105 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G72470 318 / 7e-100 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT5G58430 312 / 9e-98 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT1G54090 306 / 1e-95 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G13150 273 / 2e-82 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT3G29400 261 / 7e-78 ATEXO70E1 exocyst subunit exo70 family protein E1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G017800 [exp] 1172 / 0 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.006G203900 [exp] 937 / 0 AT5G52340 988 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.016G071000 [exp] 932 / 0 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.001G166400 [exp] 354 / 2e-113 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.015G094800 [exp] 348 / 6e-111 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 342 / 2e-108 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.003G068700 [exp] 340 / 4e-108 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.013G152900 [exp] 320 / 2e-100 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.019G124000 [exp] 315 / 2e-98 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043432 [exp] 1036 / 0 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10034151 [exp] 1015 / 0 AT5G03540 991 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10021283 [exp] 887 / 0 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10013163 [exp] 347 / 2e-113 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10016764 [exp] 352 / 2e-112 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10008126 [exp] 349 / 2e-111 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10022459 [exp] 339 / 3e-108 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10041536 [exp] 273 / 3e-81 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10012555 [exp] 272 / 2e-79 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10015757 [exp] 265 / 2e-79 AT5G13150 585 / 0.0 exocyst subunit exo70 family protein C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.010G241800.1 pacid=42798241 polypeptide=Potri.010G241800.1.p locus=Potri.010G241800 ID=Potri.010G241800.1.v4.1 annot-version=v4.1 ATGATCGTGGCAGTTTCAGGCATGGATTCACTCGGTGAAAGAGCAGCAAAGATGAGAGAAGCACTTCAAAAAAGCCAAACTATAACTGATAATGTTGTTA CAATTCTGGGTTCCTTTGATAGTCGTCTTTCAGTTCTTGAGACTGCTATGCGTCCTACTCAGATTAGAACGCATGCGATAAGGAAAGCTCATGAGAATAT TGACAAGACACTAAAGGCTGCAGAGGTTATATTGACACAGTTTGATGCTTCTCGGCAGGCAGAGGCTAAAATACTAAAGGGACCGCATGAGGACCTAGAA AGTTATCTAGAAGCAATTAATCAACTACGAAGCAACATTCGTTTCTTTAGTGGCAACAAAGGCTTTAAGAGTAGCGATGCAGTCATCAATAATGCAAATA CCTTACTTGCTAAGGCTATTTCAAAGCTAGAAGATGAGTTTAAGCAGCTTTTGGCATTGTACAGCAAGCCCGTGGAAACTGATCGTCTCTTTGAGTGCCT CCCTGAATCAATGCGGCCATCTTCAGAATCACCTGGAAACCCATTTGGTGGCAAGAATAATCATCATGAGCACCAAAACGGTACTTCAGAAACTGGTGGT TTCAAACATCTTACTCTCATACCTCCAAGGATTCTACCTTTGTTGCATGATTTAGCCCTACAAATGGTTCAAGCTGGGAACCAACAACAGTTACTTAGAA TTTACAGGGATACCCGTTCTTCAGTATTGGAGGAAAGCCTTCGCAAGTTGGGGGTTGAAAAGCTGAGCAAAGAGGATGTCCAAAGGATGCAATGGGAGGT GTTGGAGGCCAAGATTGGGAATTGGATTCATTTCATGCGCATTGCTGTTAAAATCCTGTTTGTTGGAGAAAGAAGAGTCTGTGATCAAATATTTGAAGGG TTTGATACTCTCCTTGATCAATGCTTTGCTGAATGTACTACTAGTAGTGTCTCCATGCTTCTTAGTTTTGGGGATGCAATTGCCAGAAGCAAAAGGTCAC CTGAGAAGTTATTTGTGCTTCTGGACATGTATGAGATAATGCGAGAACTACATTCAGAGGTTGAGGGAGTTTTTGGTGGTAAAGCTTGTAATGAAATTAG GGAATCCATGTTTGGTTTGACAAAAAGGCTTGCCCAGACAGCTCAAGAAACCTTTGGTGATTTTGAAGAAGCAGTTGAAAAAGATGCCACAAAAACTGCT GTTTTGGATGGGACTGTCCATCCTTTGACTAGTTATGTGATTAACTACGTGAAGTTTCTCTTTGACTATCAAACAACCTTGAAGCAACTCTTCCAAGAAT TTGAAAGCAGTGGCGAAACAAATTCACAGTTAGCAAATGTAACAATGCGAATAATGCAGGCTCTTCAAACCAATCTGGATGGGAAATCTAAGCAGTATAG AGATCCAGCTCTGACTCACTTATTTCTCATGAACAATATTCACTACATGGTCAGATCTGTGCGCAGATCAGAAGCCAAGGACTTATTAGGGGATGACTGG GTTCAAAGGCATAGAAGGGTTGTGCAGCAACATGCAAACCAATACAAAAGGACTGGTTGGTCAAAGATTCTTCAATGTCTCTCTACGCAAGGGCTTACCT CATCCGGGGGAGGAGGTTCTGCAGTACCTGGTGAGGGAGGAAGTGGCAGTGGAGCTTCAAGAGGGTTGATTAAAGACAGGTTCAAGACTTTCAATGTACA ATTTGAGGAGCTTCACCAAAAACAATCTCAGTGGACTGTTCCTGACACTGAGTTGCGAGAGTCACTAAGGCTTGCTGTTGCTGAAGTCTTGTTGCCTGCT TACAGATCCTTTATAAAACGCTTTGGGCCCCTAGTTGAGAGTGGGAAGAATCCCCAGAAGTACATTAGATACACAGCTGAGGATCTGGAAAGAATGCTGG GTGAATTTTTTGAGGGGAAGACCTTGAATGAACCCAGGCGGTAA
AA sequence Show only first row Show all	>Potri.010G241800.1 pacid=42798241 polypeptide=Potri.010G241800.1.p locus=Potri.010G241800 ID=Potri.010G241800.1.v4.1 annot-version=v4.1 MIVAVSGMDSLGERAAKMREALQKSQTITDNVVTILGSFDSRLSVLETAMRPTQIRTHAIRKAHENIDKTLKAAEVILTQFDASRQAEAKILKGPHEDLE SYLEAINQLRSNIRFFSGNKGFKSSDAVINNANTLLAKAISKLEDEFKQLLALYSKPVETDRLFECLPESMRPSSESPGNPFGGKNNHHEHQNGTSETGG FKHLTLIPPRILPLLHDLALQMVQAGNQQQLLRIYRDTRSSVLEESLRKLGVEKLSKEDVQRMQWEVLEAKIGNWIHFMRIAVKILFVGERRVCDQIFEG FDTLLDQCFAECTTSSVSMLLSFGDAIARSKRSPEKLFVLLDMYEIMRELHSEVEGVFGGKACNEIRESMFGLTKRLAQTAQETFGDFEEAVEKDATKTA VLDGTVHPLTSYVINYVKFLFDYQTTLKQLFQEFESSGETNSQLANVTMRIMQALQTNLDGKSKQYRDPALTHLFLMNNIHYMVRSVRRSEAKDLLGDDW VQRHRRVVQQHANQYKRTGWSKILQCLSTQGLTSSGGGGSAVPGEGGSGSGASRGLIKDRFKTFNVQFEELHQKQSQWTVPDTELRESLRLAVAEVLLPA YRSFIKRFGPLVESGKNPQKYIRYTAEDLERMLGEFFEGKTLNEPRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.010G241800 [exp]	0	1
AT2G18890			Protein kinase superfamily pro...		Potri.018G091200 [exp]	3.87	0.7307
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Potri.012G086700 [exp]	5.09	0.6872	WNK3.2
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.006G077600 [exp]	5.19	0.6528	MBD902
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.007G097600 [exp]	5.65	0.7514
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Potri.016G056200 [exp]	6.48	0.7209	Pt-VLN2.2
AT5G49830		EXO84B	exocyst complex component 84B ...		Potri.010G249900 [exp]	7.48	0.7432
AT5G65950			unknown protein		Potri.001G457201 [exp]	10.95	0.7163
AT5G40740			unknown protein		Potri.001G337700 [exp]	11.13	0.6494
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.007G024300 [exp]	13.03	0.6464
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Potri.012G043501 [exp]	13.85	0.7323

Compare expression of checked genes

Potri.010G241800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.