Plant FIBer expression Database

Potri.010G242050 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G242050.1 pacid=42797514 polypeptide=Potri.010G242050.1.p locus=Potri.010G242050 ID=Potri.010G242050.1.v4.1 annot-version=v4.1
ATGGCGGACTTTCCTCCAAACCTTGAAGATGGAGAGTCATGGCTGCCTTCTGATGTTTTTCTTGAAATTATATCGACAACAAATGCTAGCAAGGTTAAGA
ACAACGACAAGAATCTTCTTGTTCGTGATCATCCCACCTTAAAATCTTCTGCCAATGTTGCACCAGAAATTCAGCTATGTGACGCTTTGGGTGGTTTCAA
GCCAAATGTCGAAAGCCCTATTGGCACAAGAGTTCCAAGTGTTAACCATGGCTACCATCCATGCTGGAACCATGGATTTGAAGTTGTATCTGGACCCTTT
AACACATGCGATTCAAAGATCATGACACCAACTCATAATCAAACTGAAGGTTTCAAAAGCAGAAACGCCATGTTTGTTTATAGAAAATCAGAAGGCACGG
GGGTTTTCCTCCCTCGTTTTAACAAACCATTCTCGAAGGGAAGTGGTGTGTTGCCCAGAGGGACGGGGGTGTTCCTTAATCATCAAGTTATGGACAAAGA
CAAATATGGGTACGAGAAGAAAGAATTTGGGAAGGAGGGATCCGAGGAAAATGAGAGACACGACTCTCGATTCACATATGATCATCAAATATGTTTGCCT
CGACATGTTCAGCTCCCTACATTATACTAG
AA sequence
>Potri.010G242050.1 pacid=42797514 polypeptide=Potri.010G242050.1.p locus=Potri.010G242050 ID=Potri.010G242050.1.v4.1 annot-version=v4.1
MADFPPNLEDGESWLPSDVFLEIISTTNASKVKNNDKNLLVRDHPTLKSSANVAPEIQLCDALGGFKPNVESPIGTRVPSVNHGYHPCWNHGFEVVSGPF
NTCDSKIMTPTHNQTEGFKSRNAMFVYRKSEGTGVFLPRFNKPFSKGSGVLPRGTGVFLNHQVMDKDKYGYEKKEFGKEGSEENERHDSRFTYDHQICLP
RHVQLPTLY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G242050
[exp]
0 1
AT5G37660 PDLP7 plasmodesmata-located protein ... Potri.017G130800
[exp]
2.64 0.9202
AT4G10500 2-oxoglutarate (2OG) and Fe(II... Potri.001G451700
[exp]
2.82 0.9033
AT5G46030 unknown protein Potri.014G056000
[exp]
4.79 0.8138
AT1G71140 MATE efflux family protein (.1... Potri.004G093400
[exp]
5.74 0.9028
Potri.007G002300
[exp]
11.83 0.8001
Potri.007G039901
[exp]
14.49 0.8063
AT3G16070 unknown protein Potri.001G182500
[exp]
20.83 0.8352
AT3G50160 Plant protein of unknown funct... Potri.006G042300
[exp]
21.33 0.8868
AT4G01930 BPC1 Cysteine/Histidine-rich C1 dom... Potri.012G140133
[exp]
24.08 0.8222
AT3G20600 NDR1 non race-specific disease resi... Potri.004G023400
[exp]
26.72 0.8705

Potri.010G242050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.