Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06260 525 / 0 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT1G13250 397 / 2e-138 GATL3 galacturonosyltransferase-like 3 (.1) AT4G02130 395 / 6e-138 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT3G62660 396 / 7e-138 GATL7 galacturonosyltransferase-like 7 (.1) AT1G70090 392 / 5e-136 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT1G24170 390 / 3e-135 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G02720 389 / 5e-135 GATL5 galacturonosyltransferase 5 (.1.2) AT3G28340 385 / 1e-133 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT3G50760 372 / 1e-128 GATL2 galacturonosyltransferase-like 2 (.1) AT1G19300 361 / 3e-124 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G018100 [exp] 629 / 0 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.008G116900 [exp] 431 / 6e-152 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.010G129400 [exp] 427 / 2e-150 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.007G031700 [exp] 395 / 1e-137 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.002G200200 [exp] 393 / 1e-136 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.014G125000 [exp] 392 / 4e-136 AT3G62660 596 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.010G038300 [exp] 392 / 6e-136 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.005G128000 [exp] 384 / 3e-133 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1) Potri.014G040300 [exp] 380 / 7e-132 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034012 [exp] 513 / 0 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10012765 [exp] 506 / 0 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10041489 [exp] 417 / 3e-146 AT1G13250 491 / 2e-175 galacturonosyltransferase-like 3 (.1) Lus10034274 [exp] 411 / 6e-144 AT1G13250 489 / 9e-175 galacturonosyltransferase-like 3 (.1) Lus10010727 [exp] 401 / 6e-140 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10029215 [exp] 397 / 4e-138 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10032728 [exp] 387 / 2e-134 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10018801 [exp] 387 / 2e-134 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10016301 [exp] 384 / 2e-133 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10002440 [exp] 382 / 1e-131 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.010G242300.1 pacid=42799555 polypeptide=Potri.010G242300.1.p locus=Potri.010G242300 ID=Potri.010G242300.1.v4.1 annot-version=v4.1 ATGGCCTCCTGCACCTTTATTCTCCCCCTTGGCCTCCTGTCTTTCATCATCGTAGCCAACACAGTATCATCATTACCCTCCTCTTCTGGAGGAATCCGCC TCGGTGTTATCCGAAAACCATCTGCTGATGTCCCTGTCTTCAGAGAGGCTCCAGCTTTTCGTAATGGGGATTCCTGTGGGCCACTTAGAATCCACATTGT CATGACTCTTGATGCCAATTACCTTAGAGGCACCATGGCTGCTATTTTCTCTATCCTTCGACATTCTACTTGCCCTGAAAACATGGAGTTCCATTTTCTC TGGGCACGTTTTGACCGTGAGGTCTTCTCTAGCATCAAATCCACCTTCCCTTACCTTAACTTCAAATTTTACCGGTTTGACTCCAACCGTGTTCGCGGAA AGATCTCTAAATCCATCCGTCAATCCCTGGACCAACCTTTAAACTATGCTAGAATTTACCTTGCTGACATTATCCCATCCAACGTTAAACGTGTTATTTA TCTTGACTCTGATCTTCTTCTTGTTGATGATATTGCAAAATTGTGGGAGGTTGATTTAGAGGACAGGGTTTTGGCAGCTCCGGAATATTGTCATGCAAAT TTCACCTACTATTTCTCCAACCTATTTTGGCTCGATCCTGTTTTGGCCAGGACTTTTCATGGAAGAAGGCCTTGTTATTTTAACACTGGAGTTATGGTTG TGGATGTGGAAAAGTGGAGGCAAGTACAGCTTACACAAAAGGTTGAAGGGTGGATGACAGTGCAAAAGCAGAAGAGAATCTACCACTTGGGTTCATTGCC GCCATTTCTATTGGTTTTGGCTGGGAACATAAAAGGGGTTGATCATCGATGGAACCAGCATGGGTTAGGGGGTGACAACATGGAAGGAAAGTGTAGAAGT CTGCACCCAGGACCTATTAGTTTGCTTCATTGGAGTGGGAAAGGGAAACCTTGGTTACGGCTTGACTCGAGGAAACCTTGCATTGTGGATCATCTTTGGG CTCCATACGATCTTTATCGCTCATCGTTGCATGTTCTTGAAGAATGA
AA sequence Show only first row Show all	>Potri.010G242300.1 pacid=42799555 polypeptide=Potri.010G242300.1.p locus=Potri.010G242300 ID=Potri.010G242300.1.v4.1 annot-version=v4.1 MASCTFILPLGLLSFIIVANTVSSLPSSSGGIRLGVIRKPSADVPVFREAPAFRNGDSCGPLRIHIVMTLDANYLRGTMAAIFSILRHSTCPENMEFHFL WARFDREVFSSIKSTFPYLNFKFYRFDSNRVRGKISKSIRQSLDQPLNYARIYLADIIPSNVKRVIYLDSDLLLVDDIAKLWEVDLEDRVLAAPEYCHAN FTYYFSNLFWLDPVLARTFHGRRPCYFNTGVMVVDVEKWRQVQLTQKVEGWMTVQKQKRIYHLGSLPPFLLVLAGNIKGVDHRWNQHGLGGDNMEGKCRS LHPGPISLLHWSGKGKPWLRLDSRKPCIVDHLWAPYDLYRSSLHVLEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Potri.010G242300 [exp]	0	1
AT3G50760		GATL2	galacturonosyltransferase-like...		Potri.005G128000 [exp]	1.00	0.8090
AT2G42850		CYP718	"cytochrome P450, family 718",...		Potri.002G060700 [exp]	10.95	0.7145	CYP718.1
AT4G23020			unknown protein		Potri.001G110900 [exp]	12.40	0.7409
AT1G45688			unknown protein		Potri.002G124600 [exp]	13.52	0.7341
AT3G11320			Nucleotide-sugar transporter f...		Potri.008G063400 [exp]	14.45	0.6882
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.011G128000 [exp]	14.49	0.7181
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Potri.001G162700 [exp]	19.69	0.7306
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.010G001100 [exp]	53.98	0.6648	ATSEB1.1
AT5G64310		ATAGP1, AGP1	arabinogalactan protein 1 (.1)		Potri.001G310400 [exp]	72.45	0.6476
					Potri.013G055800 [exp]	73.36	0.6091

Compare expression of checked genes

Potri.010G242300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.