Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04840 228 / 2e-73 bZIP bZIP protein (.1) AT3G58120 88 / 8e-20 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G42380 84 / 1e-18 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT1G58110 71 / 1e-13 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT1G06070 64 / 3e-11 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G40620 59 / 7e-10 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G38900 58 / 3e-09 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G35490 57 / 4e-09 bZIP bZIP family transcription factor (.1) AT4G06598 57 / 4e-09 unknown protein AT2G31370 56 / 1e-08 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G018400 [exp] 495 / 6e-179 AT5G04840 222 / 3e-71 bZIP protein (.1) Potri.001G374200 [exp] 87 / 1e-19 AT3G58120 282 / 6e-94 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G124400 [exp] 84 / 3e-18 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.003G014800 [exp] 82 / 2e-17 AT1G58110 304 / 3e-101 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.019G091900 [exp] 81 / 2e-17 AT3G58120 285 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.004G219100 [exp] 74 / 8e-15 AT1G58110 303 / 8e-101 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.015G147800 [exp] 66 / 3e-12 AT1G58110 153 / 4e-43 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.013G091400 [exp] 64 / 3e-11 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G190700 [exp] 62 / 8e-11 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017656 [exp] 84 / 2e-18 AT2G42380 305 / 1e-103 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10033630 [exp] 84 / 2e-18 AT2G42380 294 / 7e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10039902 [exp] 83 / 2e-18 AT3G58120 181 / 8e-56 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002185 [exp] 83 / 3e-18 AT3G58120 219 / 1e-71 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10015457 [exp] 81 / 4e-17 AT1G58110 315 / 2e-105 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10028595 [exp] 60 / 4e-10 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10008605 [exp] 60 / 5e-10 AT2G40620 276 / 1e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10024204 [exp] 60 / 5e-10 AT1G06850 271 / 5e-90 basic leucine-zipper 52 (.1.2) Lus10018899 [exp] 60 / 5e-10 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10009907 [exp] 60 / 6e-10 AT1G06850 270 / 2e-89 basic leucine-zipper 52 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G242800.3 pacid=42798971 polypeptide=Potri.010G242800.3.p locus=Potri.010G242800 ID=Potri.010G242800.3.v4.1 annot-version=v4.1 ATGTCAAGGCAATCTCTCCTTCCTCCTCGCTGCCCATTTCAGAAGCCCGTGGTTTCTCGACCAATTCATGACTCCTACCCACAACACCATAGATCTCCTT CCCAAGGTTCAATTTTGGGGGAGAAGCCGGCATGGCTTGATGATTTGTTAAGTGATGAAGATGCAGATTCCAGGGGGACTTGTCTTCGCCGGTCAGCCAG TGATTCAGTCACCCTCTTGGAAGGTATTGTGGATTCGTTTTCGGGTTCGAGTCCTTATAACAATGAAGCTGCCTCAGGTGGGGGTGAAACTTGTAGTGGG CTGGAGTCAGCTTCTATGTATGGTCCTAATTCTCCTAGGCGAAGAGGGAATGTGACCTTTTCTGAGAATGCCATAGCTTCAGCACTATCGGAGTATGCGT TTCAGAATCCTCTGCAGTATGTAGACGGCAGCTTGTGCATATGGGGGAATACTCCCTTGGATTCAATGGGGAATGCATGTGGTTCGGCTGGGGAGCTCAA TGGCGAGACGAGCACTGTGAAACGGCAATCTGGGCAGCGCTCAAGAGTTCGCAAACTCCAGTATATTGCTGAACTCGAAAGAACTGTTAATGTTCTGCAG ACTTTGGAGTCAGAGTTGGCGTTCAAGGTTGCTTCAATGCTTCAGAAACGTGCTGCCTTGTCCCTGGAAAACAACACATTAAAGCAGCAGGTGGCCAGAC TGCGGCAGGAAAAATTAATCGTGGATGCTCAACATAAGACTTTGAAGAAGGAAGCTGAGAGATTGAAAAACAAGTTAGGTAGTTCCACAAATAATAAGTT CAGAACATATTCCAGATCAAGTCTTTCTCCAGAGGCAGCTAGATCAGAAGTTACATGGCAGATGGCGAGGCTTAATCTTAACTAA
AA sequence Show only first row Show all	>Potri.010G242800.3 pacid=42798971 polypeptide=Potri.010G242800.3.p locus=Potri.010G242800 ID=Potri.010G242800.3.v4.1 annot-version=v4.1 MSRQSLLPPRCPFQKPVVSRPIHDSYPQHHRSPSQGSILGEKPAWLDDLLSDEDADSRGTCLRRSASDSVTLLEGIVDSFSGSSPYNNEAASGGGETCSG LESASMYGPNSPRRRGNVTFSENAIASALSEYAFQNPLQYVDGSLCIWGNTPLDSMGNACGSAGELNGETSTVKRQSGQRSRVRKLQYIAELERTVNVLQ TLESELAFKVASMLQKRAALSLENNTLKQQVARLRQEKLIVDAQHKTLKKEAERLKNKLGSSTNNKFRTYSRSSLSPEAARSEVTWQMARLNLN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04840	bZIP		bZIP protein (.1)		Potri.010G242800 [exp]	0	1
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Potri.010G125600 [exp]	14.69	0.7293
AT1G77550			tubulin-tyrosine ligases;tubul...		Potri.006G141900 [exp]	20.73	0.7401
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Potri.008G159700 [exp]	29.29	0.6571
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Potri.006G074300 [exp]	31.89	0.7268
AT1G29790			S-adenosyl-L-methionine-depend...		Potri.011G079000 [exp]	37.14	0.7155
AT3G58830			haloacid dehalogenase (HAD) su...		Potri.005G201100 [exp]	39.06	0.7212
AT4G32190			Myosin heavy chain-related pro...		Potri.018G026300 [exp]	58.32	0.6876
AT2G39670			Radical SAM superfamily protei...		Potri.010G203300 [exp]	88.72	0.6363
AT1G13460			Protein phosphatase 2A regulat...		Potri.017G070100 [exp]	101.16	0.6678
AT1G60560			SWIM zinc finger family protei...		Potri.007G106000 [exp]	123.93	0.6613

Compare expression of checked genes

Potri.010G242800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.