Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52060 408 / 7e-143 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G22070 367 / 2e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G32290 263 / 1e-85 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25330 251 / 3e-81 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G31350 180 / 2e-53 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G51770 170 / 2e-49 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G11730 167 / 1e-48 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 166 / 5e-48 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 164 / 3e-47 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 162 / 3e-46 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G018600 [exp] 576 / 0 AT3G52060 407 / 2e-142 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G215400 [exp] 362 / 5e-124 AT5G22070 421 / 1e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.009G017300 [exp] 353 / 1e-120 AT5G22070 418 / 7e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 168 / 1e-48 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 167 / 3e-48 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 166 / 7e-48 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G254800 [exp] 161 / 2e-47 AT4G32290 210 / 1e-65 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 164 / 4e-47 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 164 / 5e-47 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008954 [exp] 464 / 1e-164 AT3G52060 400 / 2e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10028866 [exp] 457 / 8e-162 AT3G52060 393 / 1e-136 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10004106 [exp] 369 / 2e-126 AT5G22070 486 / 3e-172 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001503 [exp] 269 / 4e-88 AT4G32290 382 / 7e-132 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002919 [exp] 261 / 6e-85 AT5G25330 389 / 4e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10026959 [exp] 168 / 1e-48 AT4G31350 490 / 8e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10009738 [exp] 165 / 1e-47 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10003499 [exp] 164 / 2e-47 AT3G21310 503 / 3e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 165 / 5e-47 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 164 / 2e-46 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.010G242900.2 pacid=42799890 polypeptide=Potri.010G242900.2.p locus=Potri.010G242900 ID=Potri.010G242900.2.v4.1 annot-version=v4.1 ATGTTGTCATCTCCAATTCTCTACTCATTTTCACTCTTGCTTTCCTTTTCCCTCATCTACCTCTTCACCCCTCAAATCCTTGTTCCTCTTCAAAACGCTC TTTCTTACGAACTTGATGATCCTACTCTCTTCAAGAAAGCCCTCAAGCCTTGTAAAACCATCCCCCCCCTAGCCACCAACAATCCCACTCCTAAAATTGC CTTTCTTTTCCTTACAAACTCTGATCTCTCTTTTGCTCCTTTATGGGAACGTTTCTTCGAAGGCTACAACAATCTTTACAACATCTATGTACACGCTGAT CCATTTAGTAAAGTCTCAAACCCAGATGGGATTTTCAAGAATCGGTTCATTCCTGGCAAGAAAACAGAAAGGGGCTCTCCTTCTCTAATCTTAGCAGAAA AAAGGCTTCTTGCCAGAGCCATTCTTGATGATCCTCTCAACCTTTATTTTGCTCTTGTTTCTCAACACTGTGTCCCTCTCCATTCATTTCAATACATTCA CGATACCCTTTTCGGCCACAACATTTTGAAAACTTTCACTACTCAATCTCGTCATCAAAGCTTCATTGAGATTCTCTCCGAAGATCCAAACTTGCCTGAT AGATACAATGCTAGAGGGGAAAACATTATGTTGCCTGAAATCCCATATGAGAAATTTAGAGTTGGGTCTCAGTTTTTTGTGCTGGCAAAAAGGCATGCTT TGCTTGTACTCAAGGATAGAAAGTTATGGAGGAAATTTAAGCTTCCTTGCTTGAATACAGAGTCTTGTTACCCAGAAGAACACTACTTTCCTACACTTTT ATCAATGAAGAATCCAAGAGGGTGCAGTCACTACACATTAACAAATGTTAATTGGACTGACTGCTTTGATGGGCACCCGCATTTGTATCAAGCAGAAGAG GTTTCACCAAATCTGGTGCATGGATTGAGGCAGTCCAACTCAAGTTATTCTTATTTTTTTGCCCGGAAATTTGCTCCTGATTGCTTGCAACCATTGATGG AAATGGCAGATGATGTGATTTTCAAGGATTGA
AA sequence Show only first row Show all	>Potri.010G242900.2 pacid=42799890 polypeptide=Potri.010G242900.2.p locus=Potri.010G242900 ID=Potri.010G242900.2.v4.1 annot-version=v4.1 MLSSPILYSFSLLLSFSLIYLFTPQILVPLQNALSYELDDPTLFKKALKPCKTIPPLATNNPTPKIAFLFLTNSDLSFAPLWERFFEGYNNLYNIYVHAD PFSKVSNPDGIFKNRFIPGKKTERGSPSLILAEKRLLARAILDDPLNLYFALVSQHCVPLHSFQYIHDTLFGHNILKTFTTQSRHQSFIEILSEDPNLPD RYNARGENIMLPEIPYEKFRVGSQFFVLAKRHALLVLKDRKLWRKFKLPCLNTESCYPEEHYFPTLLSMKNPRGCSHYTLTNVNWTDCFDGHPHLYQAEE VSPNLVHGLRQSNSSYSYFFARKFAPDCLQPLMEMADDVIFKD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52060			Core-2/I-branching beta-1,6-N-...		Potri.010G242900 [exp]	0	1
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Potri.010G094800 [exp]	5.91	0.8312
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.013G152000 [exp]	9.69	0.8368
AT4G10070			KH domain-containing protein (...		Potri.013G099800 [exp]	11.31	0.8313
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.008G105200 [exp]	12.64	0.8217	Pt-PHYB.1
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G117900 [exp]	14.14	0.8232
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.005G083400 [exp]	15.09	0.7928
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.007G107800 [exp]	18.89	0.8285
AT1G28320		DEG15	protease-related (.1)		Potri.011G056100 [exp]	26.49	0.8323
AT1G18610			Galactose oxidase/kelch repeat...		Potri.015G059400 [exp]	29.08	0.8119
AT5G65685			UDP-Glycosyltransferase superf...		Potri.007G009600 [exp]	31.98	0.8194

Compare expression of checked genes

Potri.010G242900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.