Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SGJ3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44110 528 / 0 ATJ3 DNAJ homologue 3 (.1.2) AT5G22060 513 / 0 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G62600 154 / 7e-43 ATERDJ3B DNAJ heat shock family protein (.1) AT2G22360 116 / 2e-28 DNAJ heat shock family protein (.1) AT5G48030 110 / 2e-26 GFA2 gametophytic factor 2 (.1) AT4G39960 108 / 1e-25 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G47940 103 / 3e-24 DNAJ heat shock family protein (.1) AT2G20560 100 / 2e-23 DNAJ heat shock family protein (.1) AT1G28210 99 / 1e-22 ATJ1 DNAJ heat shock family protein (.1.2) AT1G59725 97 / 2e-22 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G018800 [exp] 620 / 0 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.009G015700 [exp] 581 / 0 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.002G141100 [exp] 504 / 1e-178 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.014G055300 [exp] 228 / 7e-72 AT3G44110 251 / 5e-81 DNAJ homologue 3 (.1.2) Potri.001G215132 [exp] 150 / 1e-43 AT3G44110 167 / 5e-51 DNAJ homologue 3 (.1.2) Potri.014G122600 [exp] 152 / 3e-42 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.002G198000 [exp] 150 / 2e-41 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 108 / 3e-26 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 106 / 1e-25 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004109 [exp] 491 / 6e-174 AT5G22060 597 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10042891 [exp] 454 / 1e-158 AT5G22060 554 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10028188 [exp] 453 / 3e-158 AT5G22060 563 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10002733 [exp] 280 / 3e-92 AT5G22060 299 / 6e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10008652 [exp] 280 / 3e-92 AT5G22060 300 / 5e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10013364 [exp] 265 / 9e-86 AT3G44110 291 / 3e-96 DNAJ homologue 3 (.1.2) Lus10022297 [exp] 157 / 4e-44 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 156 / 7e-44 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10014584 [exp] 152 / 3e-42 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10003651 [exp] 152 / 4e-42 AT3G62600 509 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF00684 [poplar] [flax] DnaJ_CXXCXGXG DnaJ central domain CL0392 [poplar] [flax] PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G243100.2 pacid=42799832 polypeptide=Potri.010G243100.2.p locus=Potri.010G243100 ID=Potri.010G243100.2.v4.1 annot-version=v4.1 ATGTTTGGGAGAGCACCAAAGAAAAGCGACAATACCAAGTACTATGAGATTCTTGGAGTCTCAAAGAGTGCTTCACAAGATGATTTAAAAAAGGCTTACA GGAAAGCAGCTATCAAGAACCATCCTGATAAGGGTGGTGATCCTGAAAAGTTCAAGGAGTTGGCCCAAGCATACGAGGTTCTGAGTGACCCAGAGAAACG TGAGATATATGATCAATATGGAGAGGATGCCCTCAAGGAAGGAATGGGCGGTGGCGGCGGCGGTGGCGCCCATGATCCATTTGATATCTTTCAATCCTTC TTTGGTGGCGGCAATCCATTTGGTGGAGGTGGTAGCAGCAGAGGCCGAAGGCAAAGGAGGGGTGAGGATGTGATCCACCCTCTTAAAGTATCCTTGGAAG ATATTTACAATGGCACATCCAAGAAGCTGTCTCTTTCACGCAATGTAATCTGCTCCAAGTGCAAGGGTAAAGGTTCCAAGTCTGGTGCATCATTGAAATG TTCTGGTTGCCAAGGTTCTGGAATGAAGGTCTCTATAAGACACCTTGGTCCCTCTATGATCCAGCAAATGCAGCATCCTTGCAATGATTGTAAGGGCACT GGTGAGGCAATTAATGACAAGGACCGTTGCCCTCAATGCAAGGGTGAGAAGGTGGTCCAAGAGAAAAAAGTTTTGGAAGTAGTTGTTGAGAAGGGCATGC AAAATGCACAGAGGATTACTTTCCCTGGAGAGGCTGATGAAGCTCCCGACACCGTTACAGGGGACATTGTTTTTGTCCTACAACAAAAGGAGCACCCTAA GTTTAAGAGAAAGGGTGATGACCTATTTGTCGAGCACACCCTCTCTCTTGCAGAGGCACTCTGTGGCTTCCAGTTCATTTTGACCCATTTGGATGGAAGG CAGCTCCTGATAAAATCTCAACCTGGGGAAGTAGTCAAACCTGATCAATTCAAGGCTATAAATGATGAAGGAATGCCAATGTACCAGAGGCCATTCATGA GGGGGAAACTGTACATTCATTTCACTGTTGATTTCCCAGACTCCCTGTCCCTTGATCAGTGCAAGGCCTTGGAGACCGTGCTTCCTCCACGAACCTCAGC TGAGCTTACTGACATGGAGCTTGATGAATGTGAGGAAACTACTTTACATGATGTGAACATTGAGGAGGAGATGAGGAGGAAGCAACAACAACAGGCCCAA GAAGCATATGATGAAGATGATGAAATGCATGGTGGTGGTGGCCAGAGGGTGCAATGTGCTCAGCAATAA
AA sequence Show only first row Show all	>Potri.010G243100.2 pacid=42799832 polypeptide=Potri.010G243100.2.p locus=Potri.010G243100 ID=Potri.010G243100.2.v4.1 annot-version=v4.1 MFGRAPKKSDNTKYYEILGVSKSASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGGAHDPFDIFQSF FGGGNPFGGGGSSRGRRQRRGEDVIHPLKVSLEDIYNGTSKKLSLSRNVICSKCKGKGSKSGASLKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNDCKGT GEAINDKDRCPQCKGEKVVQEKKVLEVVVEKGMQNAQRITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLAEALCGFQFILTHLDGR QLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPDSLSLDQCKALETVLPPRTSAELTDMELDECEETTLHDVNIEEEMRRKQQQQAQ EAYDEDDEMHGGGGQRVQCAQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.010G243100 [exp]	0	1	Pt-SGJ3.2
AT5G64730			Transducin/WD40 repeat-like su...		Potri.001G306500 [exp]	1.00	0.7698
AT2G46270	bZIP	GBF3	G-box binding factor 3 (.1.2)		Potri.002G167100 [exp]	3.16	0.7148	Pt-GBF3.2
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Potri.006G032100 [exp]	4.89	0.7552	RHC1.2
AT5G10860		CBSX3	CBS domain containing protein ...		Potri.017G000100 [exp]	5.29	0.6810
AT3G56680			Single-stranded nucleic acid b...		Potri.006G034700 [exp]	6.48	0.7253
AT4G33940			RING/U-box superfamily protein...		Potri.004G143900 [exp]	6.63	0.6437
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Potri.014G176500 [exp]	8.94	0.6664
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.015G007300 [exp]	10.19	0.6750
AT5G41700		ATUBC8, UBC8	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.006G110200 [exp]	11.74	0.6959
AT1G18470			Transmembrane Fragile-X-F-asso...		Potri.015G050300 [exp]	12.00	0.6730

Compare expression of checked genes

Potri.010G243100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.