Plant FIBer expression Database

Potri.010G243900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G38680 397 / 1e-138 5'-nucleotidases;magnesium ion binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G015201
[exp]
223 / 2e-72 AT2G38680 174 / 3e-54 5'-nucleotidases;magnesium ion binding (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008973
[exp]
456 / 4e-161 AT2G38680 438 / 5e-155 5'-nucleotidases;magnesium ion binding (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0137 HAD PF05822 UMPH-1 Pyrimidine 5'-nucleotidase (UMPH-1)
Representative CDS sequence
>Potri.010G243900.1 pacid=42800090 polypeptide=Potri.010G243900.1.p locus=Potri.010G243900 ID=Potri.010G243900.1.v4.1 annot-version=v4.1
ATGATAGTATATAACTCTTCCCCAGTATTTATGCTCTCTCAAATGAGTTGTTATCGTCTCCAAAACATCCTCACCGCGCTCCCTGCTTGCATAAACATCA
CTTACAACCCGCAACCCTGCTACCTCACATTTACCTCTCCCCCATCAAATAATTCCAGGGTTTTGTGTTGCGGTTATAGCTCCAAGAATCAAGTGAAAAA
AATGGAGGCGGGTCATCATGATCTTTCAAAGGTTACAGTGGTTGGTGATCCTCAGTTACTCCAAAGGAAAATCGATGCAGTTTGTTTGGCTGGTCCTGCT
AAACTCCAGGTGATAGCAGATTTTGATGGAACATTAACCAACTACTTCGTGAACGGTCGTCGAGGGCAAAGCAGTCACGGAATTTTGAAGCAGGGGAACG
CGGAGTATGATGACAAGAGGCAGGCATTGTATGAGTACTATCATCCATTAGAATTCTCCCCAACAATTCCAATTGAAGAGAAAACTAAGCTCATGGAAGA
GTGGTGGGGGAAAACCCATAATCTTCTGATTGAGGGAGGCCTCACATATGATGCAATCAAGGAGTCTGTTGCTAGCTCTGCAATTGCTTTCAGGGATGGT
GTGGTTGAACTTTTTGAGTTTTTGGAGGAAAGAGACATTCCAGTTCTCATATTCTCTGCGGGGCTTGCAGATATCATAGAGGAGGTCCTGAGACAGAAAG
TCCATAGATCTTTTAAGAATGTTAAGATTGTTTCAAACCGAATGGTATTTGATAATGATGGTTGCCTCATTTCTTTCAAAGGGAAGTTGATCCATAGTCT
AAATAAAAATGAGCATGCTCTTGAGATGGCTGCTCCTGTTCATGAACATTTCGGTGATGGTGATGGTCCGATCAATGACAATGCTTCTGTAAAGAAGAGA
ACCAATGTCCTGCTCCTTGGTGATCACCTGGGAGACTTGGGGATGTCTGATGGATTAGACTATGAGACTCGAATTTCTGCAGGTTTCCTGAATGACAACA
TTGAGAACAATCTCAGTAACTACCGCAAAGCCTTTGATGTGGTTTATCTGAATGATGCACCTATGTGGGGAGTAGTCAAGCTTGTTTCTCAGATGTGCTC
AACGGTCACCTGA
AA sequence
>Potri.010G243900.1 pacid=42800090 polypeptide=Potri.010G243900.1.p locus=Potri.010G243900 ID=Potri.010G243900.1.v4.1 annot-version=v4.1
MIVYNSSPVFMLSQMSCYRLQNILTALPACINITYNPQPCYLTFTSPPSNNSRVLCCGYSSKNQVKKMEAGHHDLSKVTVVGDPQLLQRKIDAVCLAGPA
KLQVIADFDGTLTNYFVNGRRGQSSHGILKQGNAEYDDKRQALYEYYHPLEFSPTIPIEEKTKLMEEWWGKTHNLLIEGGLTYDAIKESVASSAIAFRDG
VVELFEFLEERDIPVLIFSAGLADIIEEVLRQKVHRSFKNVKIVSNRMVFDNDGCLISFKGKLIHSLNKNEHALEMAAPVHEHFGDGDGPINDNASVKKR
TNVLLLGDHLGDLGMSDGLDYETRISAGFLNDNIENNLSNYRKAFDVVYLNDAPMWGVVKLVSQMCSTVT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G38680 5'-nucleotidases;magnesium ion... Potri.010G243900
[exp]
0 1
AT4G21110 G10 family protein (.1) Potri.004G186600
[exp]
2.64 0.8168
AT2G02050 NADH-ubiquinone oxidoreductase... Potri.010G099900
[exp]
19.23 0.7992
AT3G25500 AHF1, AFH1, ATF... ARABIDOPSIS THALIANA FORMIN HO... Potri.007G140200
[exp]
28.46 0.7747
AT1G50710 unknown protein Potri.011G090800
[exp]
31.43 0.7579
AT2G46540 unknown protein Potri.002G173101
[exp]
33.70 0.7940
AT3G48425 DNAse I-like superfamily prote... Potri.015G088900
[exp]
42.70 0.7243
AT5G43330 c-NAD-MDH2 cytosolic-NAD-dependent malate... Potri.008G166800
[exp]
53.21 0.7439 CMDH.2
AT3G05910 Pectinacetylesterase family pr... Potri.005G001500
[exp]
56.23 0.7428
AT1G14310 Haloacid dehalogenase-like hyd... Potri.010G093900
[exp]
63.21 0.7523
AT5G61240 Leucine-rich repeat (LRR) fami... Potri.008G093400
[exp]
67.32 0.7265

Potri.010G243900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.