Plant FIBer expression Database

Potri.010G244100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G11760 658 / 0 unknown protein
AT5G04860 645 / 0 unknown protein
AT2G10560 254 / 7e-79 unknown protein
AT2G25460 119 / 1e-28 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G015700
[exp]
1176 / 0 AT3G11760 665 / 0.0 unknown protein
Potri.006G201200
[exp]
811 / 0 AT3G11760 818 / 0.0 unknown protein
Potri.016G067600
[exp]
791 / 0 AT3G11760 803 / 0.0 unknown protein
Potri.018G027200
[exp]
311 / 1e-96 AT3G11760 327 / 5e-103 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021254
[exp]
714 / 0 AT3G11760 793 / 0.0 unknown protein
Lus10013598
[exp]
696 / 0 AT3G11760 759 / 0.0 unknown protein
Lus10016183
[exp]
668 / 0 AT3G11760 771 / 0.0 unknown protein
Lus10029364
[exp]
653 / 0 AT3G11760 733 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0154 C2 PF10358 NT-C2 N-terminal C2 in EEIG1 and EHBP1 proteins
Representative CDS sequence
>Potri.010G244100.1 pacid=42798008 polypeptide=Potri.010G244100.1.p locus=Potri.010G244100 ID=Potri.010G244100.1.v4.1 annot-version=v4.1
ATGGTGGTGAAGATGATGAGGTGGCCACCATGGCCACCTCTGTCATCGAGAAAATTTGAGGCCAAATTGATCGTTCACAAACTGCAAGGCCTAGATTTGG
TACAAGATGAAGAGCAAAACAGTGATGAGAGCAAGAAGGGCTTGGTGGTTGAGATAAAGTGGAAAGGTCAGAAGGGTATTGCTTTTAGGAGGTCTGTAAA
GCGGAATTTTACCGAGGAAGGAGGTTTCGAAGGTGACGGGTTTCAATGGAATGAAGAGTTTAGAAGTGTGTGTAATCTTTCTGGAAATAAAGATGGTGTC
TTTCTTCCTTGGGAAATTGCCTTTGCAGTTTTCAGTGGCTTGAACCAAGGGCCAAGGAGTAAGGTTCTTTTAGTTGGAACCGCTACATTAAACCTCTCGG
AATATGCTTCAACAGCTAAGGAGAAAGAAGCTGAAATTGCTGTTCCTTTAACAGTTCACAATGGCACCGTTGAGGGCACTCCCTTGCTTCATTTGTCTCT
CAGGTTGATGGAATTGAGAACTATTCGAGAACCTCTACAAGCAGTGCAGAGAGTGATAGAGACTGCCCCATCATCACCCTCATCTCTTGAAACTCTATCA
CCAAGGAGAGATGAACTTTCTGTTCTTAAAGCAGGTTTGAGAAAAGTGAAAAGCCTCCAAGTGAGAAAAAAGGCTTGTCACAAAGAGAACAGTAATGATA
GGTGCTGTAACAGAATCGAAGATCATGAGGACAACTACCCATTTGATACAGATTCACTCGATGATGATGCTGAGGGGGAATCGGAGGAGAGCAACGGGGA
TCCTAGTGCCCAGCTGTCATTCAATTATGAAACATTGGCGCATGCAAACAAGGCTGGAGGATCATTTCATTCAATTTCTATAACTAATGGTGAAGATGAG
AGTTGGATATACTATAACCATTGTAAACCGGATATGGGATCTTTGTATGTCGAATACCCAACTGCATCAGACCATGAACAATCTTCGAAACAGAGTTCAA
AACTTGGAATCTTAGCTTGGAGGAAAAGAAAACTGAGCTTTATATCCCCTAAGCCTAAATCTAAAGGCGAGCCTCTCTTGAAAAAGGATTGTGGAGAAGA
GGGTGGTGACGACATTGATTTTGATCGCAGGCAGCTTAGCTCCTCTGATGAGTCCAGTTTTGGGTGGAATAAATCGGAAGAAGGTTCGACTACTAGTAGA
TCATCATTCACCGAATTTGGGGGCGACAATTTTACTGTAGGCAGCTGGGAGACAAAAGAAGTAATAAGCCGTGACAGGCACATGAAGCTCCAAGCACAGG
TCTTTTTCGCTTCAATTGATCAGAGGAGTGAGCGAGCTGCTGGTCAAAGTGCCTGTACGGCACTGGTTGCTTTCATTGCTAATTGGTTGCAGTCTAACCG
ATATGAAGTGCCAATCAAGTCTGAATTCGACTGCTTGATCAGAGATGGATCTTTAGAGTGGAGAAATCTCTGTGAGAAAGAGGACTATAGACAACGATTT
CCTGACAAGCACTTTGACCTTGAGACAATTCTTCAAGCTCAAATTTGTCCTCTTTCAGTTGTCCCAGAAAAGTCCTTCATTGGATTCTTCCATCCAGAAG
GCCTAGAAGGAGATTTTGACTTCCTTCATGGCGCAATGTCCTTTGACAGTATTTGGCAGGAGATTAGTCATCATGGGTCAGACTGGTCTAACAATTCTGA
CCCTTTGGTCTACGTTGTAAGTTGGAATGACCACTTTTTTGTCCTCAAGGTTGAACGGGATGCCTACTATATCATTGACACACTGGGAGAGAGGCTTTAT
GAGGGATGCAATCAAGCCTATGTCCTAAAATTTGACAAAGATACGACAATCCAGAAACTACCAAAGGAAACTAAAGGATCAGATGAAAAAACTGTTGGCA
ACAAAGTGCAACCAAGCAGCTCCAAGGAAAAAACTCCAGCTGATAGGAATCTGCCATCAATTCCAAACGAGGGAGAAAAGACTCCGATGGAAGAAGAGAT
TGTGTGTAAAGGAAAGGAGTCATGCAAGGAATATATCAAGAGTTTCTTGGCTGCAATCCCTTTAAGGGAATTGCAGGCTGATATCAAGAAGGGTTTGATG
GCATCAACACCCCTTCACCATCGACTTCAAATTGAGTTCCACTACACCCAGCTAACGCTACCCGTAGATGAAAATTCATCAAGAGATGTAACTGTTTGCT
GA
AA sequence
>Potri.010G244100.1 pacid=42798008 polypeptide=Potri.010G244100.1.p locus=Potri.010G244100 ID=Potri.010G244100.1.v4.1 annot-version=v4.1
MVVKMMRWPPWPPLSSRKFEAKLIVHKLQGLDLVQDEEQNSDESKKGLVVEIKWKGQKGIAFRRSVKRNFTEEGGFEGDGFQWNEEFRSVCNLSGNKDGV
FLPWEIAFAVFSGLNQGPRSKVLLVGTATLNLSEYASTAKEKEAEIAVPLTVHNGTVEGTPLLHLSLRLMELRTIREPLQAVQRVIETAPSSPSSLETLS
PRRDELSVLKAGLRKVKSLQVRKKACHKENSNDRCCNRIEDHEDNYPFDTDSLDDDAEGESEESNGDPSAQLSFNYETLAHANKAGGSFHSISITNGEDE
SWIYYNHCKPDMGSLYVEYPTASDHEQSSKQSSKLGILAWRKRKLSFISPKPKSKGEPLLKKDCGEEGGDDIDFDRRQLSSSDESSFGWNKSEEGSTTSR
SSFTEFGGDNFTVGSWETKEVISRDRHMKLQAQVFFASIDQRSERAAGQSACTALVAFIANWLQSNRYEVPIKSEFDCLIRDGSLEWRNLCEKEDYRQRF
PDKHFDLETILQAQICPLSVVPEKSFIGFFHPEGLEGDFDFLHGAMSFDSIWQEISHHGSDWSNNSDPLVYVVSWNDHFFVLKVERDAYYIIDTLGERLY
EGCNQAYVLKFDKDTTIQKLPKETKGSDEKTVGNKVQPSSSKEKTPADRNLPSIPNEGEKTPMEEEIVCKGKESCKEYIKSFLAAIPLRELQADIKKGLM
ASTPLHHRLQIEFHYTQLTLPVDENSSRDVTVC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G11760 unknown protein Potri.010G244100
[exp]
0 1
AT2G37900 Major facilitator superfamily ... Potri.006G092000
[exp]
1.41 0.8676
AT4G31500 SUR2, RNT1, RED... SUPERROOT 2, RUNT 1, RED ELONG... Potri.002G025425
[exp]
2.23 0.8685
AT3G60890 ZPR2 LITTLE ZIPPER 2, protein bindi... Potri.002G149600
[exp]
3.46 0.8246
AT2G40460 Major facilitator superfamily ... Potri.019G055800
[exp]
6.32 0.8288
AT2G26270 unknown protein Potri.006G218800
[exp]
8.00 0.7598
AT3G20640 bHLH bHLH123 basic helix-loop-helix (bHLH) ... Potri.001G410600
[exp]
8.48 0.8324
AT3G12890 ASML2 activator of spomin::LUC2 (.1) Potri.005G097700
[exp]
9.16 0.7767
AT5G66770 GRAS GRAS family transcription fact... Potri.007G026300
[exp]
9.59 0.6853
Potri.010G076150
[exp]
9.79 0.8156
AT1G42540 ATGLR3.3 glutamate receptor 3.3 (.1) Potri.002G007400
[exp]
10.39 0.8088 GLR3.2

Potri.010G244100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.