Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36540 190 / 4e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G26190 194 / 3e-56 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G36550 131 / 2e-38 unknown protein AT3G29760 132 / 1e-35 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G244400 [exp] 255 / 3e-85 AT2G36540 169 / 1e-51 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G059000 [exp] 228 / 3e-72 AT4G26190 253 / 9e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.004G116400 [exp] 227 / 4e-69 AT4G26190 235 / 4e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019759 [exp] 243 / 3e-80 AT2G36540 174 / 1e-53 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10034676 [exp] 213 / 4e-64 AT4G26190 225 / 3e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10017858 [exp] 213 / 5e-64 AT4G26190 224 / 8e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10021147 [exp] 213 / 7e-63 AT4G26190 241 / 2e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007989 [exp] 210 / 7e-62 AT4G26190 247 / 3e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032890 [exp] 189 / 1e-58 AT4G26190 214 / 7e-63 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10016365 [exp] 137 / 6e-40 AT2G36540 87 / 1e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10027135 [exp] 120 / 6e-33 AT3G29760 134 / 5e-36 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019760 [exp] 99 / 6e-25 AT2G36540 93 / 7e-23 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03031 [poplar] [flax] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Potri.010G244200.2 pacid=42797664 polypeptide=Potri.010G244200.2.p locus=Potri.010G244200 ID=Potri.010G244200.2.v4.1 annot-version=v4.1 ATGGCTGGCAATAGGGATGACCTAAATTGTCATGAAGAAGATGTGGATGGCCTAAATGGGAATGAGATTGAACTAGAGAAGCTAAGCCTTGGTCCAGATG GAAGCAAGAAACTTCTTGTACTTGATCTAGCTGGGGTACTGTGTGACAGGGTGTTTCACAAAAACAGGGCCAATATCCCAGATAATCGTACTCCTGATGC TGCCAGTGGAAGCTTTTTCGTTTACAAGAGGCCATTCTGTGAAGAGTTTGTGAGATTTTGCCTTGAAAGGTTTGATGTTGGAATCTGGTCTTCTGCCAGA AGGACCAACTTGGAAACTGCCCTTGATTGTGTGATAGGAGAACTCAAAGGCAGACTCTTATTTGTCTGGGACCAAGATGATTGCACTGATTCTGGGTTCA GCACCAAGGAAAACAAGAACAAGCCAATCTTTTTCAAGGAGTTGAAGAAACTATGGGACAACGAGTCCTCTAATCTTCCATGGAGAAAAGGGCAATATTC TTCATCAAACACAATACTGATTGATGATAAACCTTACAAGGCACTTCTAAATCCTCCTTCCACGGCAATATTTCCCACCGAATACAAGCCGGACCAACTG GATGATGCTACTTTAGGTCCAAATGGTGAGCTCCGACTGTACTTGGATGGCCTGGCAAGAGCAGCAGATGTCCCTGGATATGTGAAGGAACACCCTTTTG GACAGTCTGCTATAACAGCTATCCATCCTGACTGGGATTTCTACTCCAACATCATTGACAGTTCCCAGCTTCTGGGAAAGTCATGA
AA sequence Show only first row Show all	>Potri.010G244200.2 pacid=42797664 polypeptide=Potri.010G244200.2.p locus=Potri.010G244200 ID=Potri.010G244200.2.v4.1 annot-version=v4.1 MAGNRDDLNCHEEDVDGLNGNEIELEKLSLGPDGSKKLLVLDLAGVLCDRVFHKNRANIPDNRTPDAASGSFFVYKRPFCEEFVRFCLERFDVGIWSSAR RTNLETALDCVIGELKGRLLFVWDQDDCTDSGFSTKENKNKPIFFKELKKLWDNESSNLPWRKGQYSSSNTILIDDKPYKALLNPPSTAIFPTEYKPDQL DDATLGPNGELRLYLDGLARAADVPGYVKEHPFGQSAITAIHPDWDFYSNIIDSSQLLGKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36540			Haloacid dehalogenase-like hyd...		Potri.010G244200 [exp]	0	1
AT2G18370			Bifunctional inhibitor/lipid-t...		Potri.001G232900 [exp]	4.12	0.9023
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.014G096300 [exp]	4.35	0.8627	CPC.2,MYB217
					Potri.014G057850 [exp]	5.65	0.8763
					Potri.017G110800 [exp]	7.74	0.8696
					Potri.019G017739 [exp]	12.32	0.7829
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.014G120000 [exp]	14.14	0.8325
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.004G088700 [exp]	14.24	0.8792
AT4G03230			S-locus lectin protein kinase ...		Potri.013G150800 [exp]	16.06	0.8894
AT5G41380			CCT motif family protein (.1)		Potri.001G101200 [exp]	16.06	0.8804
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119900 [exp]	16.43	0.8731

Compare expression of checked genes

Potri.010G244200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.