Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36540 169 / 1e-51 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G26190 171 / 3e-48 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G36550 120 / 3e-34 unknown protein AT3G29760 104 / 2e-25 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G244200 [exp] 250 / 4e-83 AT2G36540 190 / 4e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G059000 [exp] 204 / 8e-63 AT4G26190 253 / 9e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.004G116400 [exp] 186 / 6e-54 AT4G26190 235 / 4e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019759 [exp] 205 / 2e-65 AT2G36540 174 / 1e-53 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10021147 [exp] 182 / 4e-52 AT4G26190 241 / 2e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007989 [exp] 182 / 9e-52 AT4G26190 247 / 3e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10034676 [exp] 176 / 3e-50 AT4G26190 225 / 3e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10017858 [exp] 174 / 1e-49 AT4G26190 224 / 8e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032890 [exp] 155 / 1e-45 AT4G26190 214 / 7e-63 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10016365 [exp] 108 / 1e-28 AT2G36540 87 / 1e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019760 [exp] 105 / 5e-27 AT2G36540 93 / 7e-23 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10027135 [exp] 101 / 2e-25 AT3G29760 134 / 5e-36 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03031 [poplar] [flax] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Potri.010G244400.1 pacid=42797189 polypeptide=Potri.010G244400.1.p locus=Potri.010G244400 ID=Potri.010G244400.1.v4.1 annot-version=v4.1 ATGGCTGAAGGAAAGAGCACAGACAGTAGCCTGAAGCTCAAGTCAGTTATCAACGATGATGACAGTAAGGACAATGAAGAAGATAAGGGAGATTTGCCTG ATGATCTTTCACTGGAAAAAATAAGCCTTAAAGTTCCGAAAAAGAAACTCCTCATCCTTTGCCTTGGCGGGCTACTATGTCACAGGGTCTGCATTAGACG CGGTTCCGGTAACGTTCAGACAAACCGCCGTCCTGATGCCTCGTATGGAAGCTTTAAAGTTTACAAGAGGCCATTCTGCGATGATTTTGTGAAATTCTGC TTCGAAAGATTCGAGGTTGGAATCTGGTCTTCTGCTAGAGAATGGTACATGAATGATGCTCTTGATGGTGTTATGAGAGGTTTCAGGTCCAAGCTGTTAT TTGCTTGGGACCAAGACAGATGTACTGATTCAGGGTTCAAAACCTTGGAGAACAAGAAGAAGCCCATCTTTCTTAAGCAATTTAAGCAGCTCTCTGCTCT TTCATGGTGCAAGGGGCAAGATACTTCCTTGAACACTTTGCTGATTGATAATGACCCCTACAAGTCTCTTCTAAATCCTTCCCACACCGCGATTTTTCCT GACGAATACACGGTGGACTGTGCTACTGATTCTGCTTTAGGTCCTGAGGGTGATCTTCGGGTCTTCTTGGAAGGCCTGGCTGATGCTAAAGATGTTCCAT CCTATGTGAAGGACCATCCTTTTGGGAATCCTGCAATCACTCCCTTGCACCCTGACTGGGATTTTTACTCCAAGATTGTTCGACGCCATAGCAAGGAACC GATCGTGAACTAG
AA sequence Show only first row Show all	>Potri.010G244400.1 pacid=42797189 polypeptide=Potri.010G244400.1.p locus=Potri.010G244400 ID=Potri.010G244400.1.v4.1 annot-version=v4.1 MAEGKSTDSSLKLKSVINDDDSKDNEEDKGDLPDDLSLEKISLKVPKKKLLILCLGGLLCHRVCIRRGSGNVQTNRRPDASYGSFKVYKRPFCDDFVKFC FERFEVGIWSSAREWYMNDALDGVMRGFRSKLLFAWDQDRCTDSGFKTLENKKKPIFLKQFKQLSALSWCKGQDTSLNTLLIDNDPYKSLLNPSHTAIFP DEYTVDCATDSALGPEGDLRVFLEGLADAKDVPSYVKDHPFGNPAITPLHPDWDFYSKIVRRHSKEPIVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36540			Haloacid dehalogenase-like hyd...		Potri.010G244400 [exp]	0	1
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102200 [exp]	1.73	0.9348
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102700 [exp]	3.16	0.9297
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188100 [exp]	4.24	0.8900
AT2G44930			Plant protein of unknown funct...		Potri.017G024866 [exp]	4.89	0.8954
AT4G21960		PRXR1	Peroxidase superfamily protein...		Potri.004G015300 [exp]	5.65	0.8622	Pt-PRXR1.1
AT3G25560		NIK2	NSP-interacting kinase 2 (.1.2...		Potri.008G110300 [exp]	6.00	0.8953
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Potri.005G134200 [exp]	8.00	0.8833
					Potri.001G075201 [exp]	10.00	0.8451
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G103000 [exp]	10.90	0.8564
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.008G146400 [exp]	10.95	0.8939

Compare expression of checked genes

Potri.010G244400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.