Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10650 352 / 2e-101 AtNUP1 unknown protein AT5G20200 84 / 5e-16 nucleoporin-related (.1) AT4G31430 56 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G014800 [exp] 1181 / 0 AT3G10650 379 / 1e-110 unknown protein Potri.008G015350 [exp] 119 / 8e-29 AT3G10650 77 / 2e-15 unknown protein Potri.018G129900 [exp] 107 / 2e-23 AT5G20200 317 / 1e-96 nucleoporin-related (.1) Potri.018G006200 [exp] 82 / 2e-15 AT4G31430 148 / 4e-38 unknown protein Potri.006G275200 [exp] 59 / 2e-08 AT4G31430 156 / 3e-41 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028861 [exp] 462 / 9e-141 AT3G10650 436 / 2e-131 unknown protein Lus10034137 [exp] 405 / 3e-121 AT3G10650 323 / 2e-92 unknown protein Lus10008959 [exp] 404 / 2e-119 AT3G10650 405 / 4e-120 unknown protein Lus10043447 [exp] 401 / 4e-118 AT3G10650 320 / 4e-90 unknown protein Lus10019408 [exp] 90 / 8e-18 AT5G20200 273 / 2e-80 nucleoporin-related (.1) Lus10043265 [exp] 85 / 2e-16 AT5G20200 290 / 8e-87 nucleoporin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G244700.7 pacid=42799693 polypeptide=Potri.010G244700.7.p locus=Potri.010G244700 ID=Potri.010G244700.7.v4.1 annot-version=v4.1 ATGGCGGCGGTGACTCGGGAAAGAAATGAGAGGCCGTATGAAGACGGAGGAGGTTATGGGAAGTTTCCAAAAAGGCCGTTTCGAAGGAGTACGCAAACTA CGCCTTATGATCGTCCTGCGACGGCAATTCGAAACCCTAGTGGGAGTGGTAATGGTTGGTTGTCGAAATTAGTGGATCCGGCTCAGAGACTCATTGCTTC TGGTGCCCAAAGGCTTTTCGCTTCTGTCTTTCGTAAACGACTGCCTGCGCCTCCGGTGGTGGCTCCTCCGTCTCAGCCGCCGGAGACGGAGCGGGGGACA GAGGAAAACCGGGGAGTAATGGATAAGCAAAAAGGAGCCTTTTCCACAAAGGATCTTTTCGAAACACATAGAGCAACCACCAATGGATGCAGTGGTCCAA GTGATGGTTCTGATATGGACGGGGTTACTGAACTTGAAGTAATTCTAAAGCAGAAGACTTTTACCAGGTCTGAAATTGATCGATTGACTGCCCTGCTGCA ATCTAAGACTGTTGATTTTCCTACTGGAAATGAAGAGAAGAAATCTGAAGCGATTGCTTCAAAAGCTATGGTCTCTCAAGGCAAAAAGGAGTTATTGACT ACCCCTGTTAATAATGGGTTTGATGGCTGCTTTAATTCAACACCTATTGTCAGCTCAAGTGTCCTTGAGGAGGATGTTGGTTCCCCTACAGAGCTTGCAA AATCTTACATGCGTAGTAGGCCGTTAAAAGTATCACCATCAATGCTAGAATCACAGAGTCAGGCATTAAGGGAAAATCCAACAGTTCTGACCAACCATAC ATTTACTCCGAAATCACCAATGATTTCAATTGCGCCACGTTCTTCTGGCCATGCTGAGTTTCCTGAGAATGGTTTTGCGACACCAAGATCCCGAGGTAGA TTTGCTATATACAGTATGACTCGAACACCATATTCCAGAGTTCATGCAACTACTGGCCTCCAGGGTACAAGAACGGCAAGTGATGCTTTTGCTGGACCAT CATCTTCGTTTCAGAACGCATGGGAGAACAATGGATTTTCTGGATCTAAACAAGGGGCTTCAAAGAGGAGGAGTTCTGTCCTGGATAATGATATGGGATC TGTCGGTCCAATACGTAGAATTCGTCAGAAATCTAACCTTCTGCCTATGTCTGGTACTCTTTCTATTCGTGGAAATGGTATGGTTTCTAATGCTGCTCGA AGGCTAACCTCAACAGAGAAGCCAGTTTTAGCAGGCGAACCATTGAAGGATAATGCGAATAGCAATGTCCATGGTACCACTTTTACCCCTGTTCCCTCCA AGTCCAGTGAGATGGCATCAAAGATATTGCAGCAGCTTGATGTGTTGGTCTCATCGAGGGAGAAGTCTCCTGCCAGGTTGTCACCATCCATGCTACGGGG ACAAGCTCTTAGAAGCTTGGAGGATTTTGATTCTTCGAAGTTGCTAGAAATTGTTAATGATAATAACAAGTTGGATGCTAAGCCCAACACCTCGCTACCT GATGCACGAGAGTCTGTGTTTAAAATGAAAGACAAAATTGAAGAAAATGGTCCAAGCAAATCCATTCTTCCTTATGACAAGTCAGCCTCCGCAGTAAATG GTATGGGCGCCACAAGTTCAATGAAGAATGATGTGGCTGGAGTCAAAACAACAGCTTTTCCTGTGACGAGCACCATTGTCCAGTCCCCTCAACAGAAGAA AAGGGCTTTCCAGATGAGCGCACATGAGGATTTTCTGGAGCTTGATGATGATGATGACTACCTGAATCGGACTGTGTCTGGTATGTTGGCTGAAGGGCGA GAAAAGATTGGTTCTGAATTGGTTGAAAGAAAAACCATTGGTGCTGAAGCTATTGTATTGGAGAAGTCTCCAGCTCTTTCTGAAGTCAACTCCCCATCAA CTTCTACACTCAACCAAAAAAATGCAGGGATTGATGGGTCTGTGATTGCTGAAAAGAGCATCAGCTTTACATCTCTAGCGACACCATTGCCTGCCATGAC TGATAAGCAGGCTGTAGTAAACCAGAAGTTAGCTTCAATATCTGATGAAGGTGCCCAACCAAACTACTCGAATGCTTCCCCTCAAATATTTAGCTCCAGG GAGAAGGTTGCTTTGCCAAAGGAACTGAATGGCACCTCCCAAACATTCCATTTCAGCAATAAAACTGGTGATAAAGTTGCACCATTTGCGTTTTCTTCTC CAGTCCTGAGTGACCCATCTGTCCCAAAGCTGGGTCTATCATCAGATGCCAAACCAGAGGGTTTCAGCTTTACGTCTGTTGCTACTGGTGCTACTGAGTT GGTGACCAGAGACCCTGGACTAGATAAAACTGAAGATAAGAGCAGTTTGAAGGATGAGGGTTCCTTCAGGGCACCTGAAAATGTGCCTTCTACTTCAACT TCATCGACTGGAAGCCTGTTCTCATTTGGCATCACCACCAATGGTTCAAGTCTAAATAATGGATCTCTTGCATCTACCCCATCTTCATATTCCTCACCCA GTCCACCTCTACTGTCAAGTAACTTTACTGGTCAAAATTCATCCAGCGTCTTTGCCAACAGTGTTGCTAGAGGCAGTATTAATGCCCCTACCACTGCATT TACAATGGCAAACTTTGACGGGAATAGCAACTTCTCTATTTCAGCATCAGCACCTTCCTTGACGGCTACACCTATTTCCAAATTTGGGTCTGTCCCATCA ACTTCAGCCTCAACAGTGCCATCTACTACTGATGAAACAACAGAAGCAAAAACAAAAGAACCAGGCTTTGGCAACCCAACTAGTGGAGCTGGCAGTGTTT TTGGTGGTACATGTTCTGGAATTACAAACACAGGCAATAATATTTTTGGCAAGACCCCTGCAGCTACCAGCAAAGGAAATAGTTTTTTTGGTGGTACATT CCCTGCAGTTACGAGCTCAGGAAGCAGCGTTTTGAATGCTACATCTTCTGCATTTACAAGCACAGGAAGTGGTCCTTTTAGCTTGAATGCTGGGAGCTCA ACTTCAGCTGCTACTAATCAATCTCAGGGTTTTAATCCTTTTAGTGCTAGCAGTGCTCAGGTTTCTGCTGCTGGAACTGGTATGGGAACTGCAACACAGA CCATGCCGATGCAATTTAGTTCACCTGCATCAACTCCTTTTGCTTTGACTGGGAGTGCAGCCTTTTCTTCTGGCAATCCCACATTTGGCTCTTCTTCTAC ATCTAAACTGTTCAGTTCTGGTGCTTCTTTTGGACTTGCCTCTTCTACTACCTCTTCAGAGTCCATCTCTGTTAGCTCCATCGCGAGCCCTGCATCTACT GTCTTTGGTTCCAACTGGCAGGCCCCAAAATCTATGGGATTTTCAACATCCTCTTCTTCCTCGACTCCATTTTCCTTTGGAGCAACTTCTAATGCTGTTA CAAGCAGCAGTGCATCCGTGGGGTTTGCCCCCAGTGTCTCATCTGGTCCTGCTTCCCCCTTCAGTTCACCTGCATCCACTACTCCATCACAGCCTGTGTT TGGCAACCCAAATCCTGGCTTCAGGTCTGGTTCATCTCCATCTGGTAATAATGACCAAATGAGCATGGAGGACAGCATGGCAGAGGACACAGTTCAGGCA ACCACCCCTTCAGTTCCTGCATTTTTCCAACAACCTGCTGCTGCCCCTGGCCCTCCATTTGGTTTTTCTACTCCGCCAGGAGGGAATCAGTTTACTTTGA CAGGTTCATCAGGTGCAAATCCCTTTCAATTTGAAAGCCAACCAAATCTGGCTGCGCCACAGAACCCAGCTTTTCAGGCTTCTGCTAGTCGGGAGTTTAA TGCTGGAGGAAGCTTCTCGTTTGGTGCAGGTGGTGGTGACAAGCCTGGTAGAAAATTTGTCAGAGTAAAAAAAACACAGCGCAAGCGGTGA
AA sequence Show only first row Show all	>Potri.010G244700.7 pacid=42799693 polypeptide=Potri.010G244700.7.p locus=Potri.010G244700 ID=Potri.010G244700.7.v4.1 annot-version=v4.1 MAAVTRERNERPYEDGGGYGKFPKRPFRRSTQTTPYDRPATAIRNPSGSGNGWLSKLVDPAQRLIASGAQRLFASVFRKRLPAPPVVAPPSQPPETERGT EENRGVMDKQKGAFSTKDLFETHRATTNGCSGPSDGSDMDGVTELEVILKQKTFTRSEIDRLTALLQSKTVDFPTGNEEKKSEAIASKAMVSQGKKELLT TPVNNGFDGCFNSTPIVSSSVLEEDVGSPTELAKSYMRSRPLKVSPSMLESQSQALRENPTVLTNHTFTPKSPMISIAPRSSGHAEFPENGFATPRSRGR FAIYSMTRTPYSRVHATTGLQGTRTASDAFAGPSSSFQNAWENNGFSGSKQGASKRRSSVLDNDMGSVGPIRRIRQKSNLLPMSGTLSIRGNGMVSNAAR RLTSTEKPVLAGEPLKDNANSNVHGTTFTPVPSKSSEMASKILQQLDVLVSSREKSPARLSPSMLRGQALRSLEDFDSSKLLEIVNDNNKLDAKPNTSLP DARESVFKMKDKIEENGPSKSILPYDKSASAVNGMGATSSMKNDVAGVKTTAFPVTSTIVQSPQQKKRAFQMSAHEDFLELDDDDDYLNRTVSGMLAEGR EKIGSELVERKTIGAEAIVLEKSPALSEVNSPSTSTLNQKNAGIDGSVIAEKSISFTSLATPLPAMTDKQAVVNQKLASISDEGAQPNYSNASPQIFSSR EKVALPKELNGTSQTFHFSNKTGDKVAPFAFSSPVLSDPSVPKLGLSSDAKPEGFSFTSVATGATELVTRDPGLDKTEDKSSLKDEGSFRAPENVPSTST SSTGSLFSFGITTNGSSLNNGSLASTPSSYSSPSPPLLSSNFTGQNSSSVFANSVARGSINAPTTAFTMANFDGNSNFSISASAPSLTATPISKFGSVPS TSASTVPSTTDETTEAKTKEPGFGNPTSGAGSVFGGTCSGITNTGNNIFGKTPAATSKGNSFFGGTFPAVTSSGSSVLNATSSAFTSTGSGPFSLNAGSS TSAATNQSQGFNPFSASSAQVSAAGTGMGTATQTMPMQFSSPASTPFALTGSAAFSSGNPTFGSSSTSKLFSSGASFGLASSTTSSESISVSSIASPAST VFGSNWQAPKSMGFSTSSSSSTPFSFGATSNAVTSSSASVGFAPSVSSGPASPFSSPASTTPSQPVFGNPNPGFRSGSSPSGNNDQMSMEDSMAEDTVQA TTPSVPAFFQQPAAAPGPPFGFSTPPGGNQFTLTGSSGANPFQFESQPNLAAPQNPAFQASASREFNAGGSFSFGAGGGDKPGRKFVRVKKTQRKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10650		AtNUP1	unknown protein		Potri.010G244700 [exp]	0	1
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Potri.018G036600 [exp]	1.00	0.9313
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.016G097300 [exp]	4.89	0.8898
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Potri.002G258766 [exp]	6.70	0.8739
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Potri.006G078000 [exp]	8.12	0.8633	HEN2.1
AT1G72890			Disease resistance protein (TI...		Potri.011G012901 [exp]	8.36	0.8689
AT5G43820			Pentatricopeptide repeat (PPR)...		Potri.005G247200 [exp]	8.48	0.8522
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.001G271200 [exp]	11.40	0.8582
					Potri.017G019932 [exp]	12.68	0.8627
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Potri.013G068400 [exp]	13.74	0.8633
AT5G58410			HEAT/U-box domain-containing p...		Potri.019G126000 [exp]	16.52	0.8507

Compare expression of checked genes

Potri.010G244700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.