Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16010 295 / 7e-101 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT2G38050 77 / 2e-16 DWF6, DET2, ATDET2 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT1G72590 72 / 2e-14 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT2G16530 69 / 2e-13 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) AT3G55360 58 / 2e-09 ECR, CER10, ATTSC13, TSC13 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G012700 [exp] 428 / 2e-153 AT5G16010 278 / 2e-94 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G013100 [exp] 332 / 2e-115 AT5G16010 298 / 4e-102 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245266 [exp] 332 / 3e-115 AT5G16010 291 / 2e-99 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245332 [exp] 326 / 6e-113 AT5G16010 289 / 1e-98 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012800 [exp] 317 / 2e-109 AT5G16010 266 / 3e-89 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.013G134433 [exp] 79 / 4e-17 AT2G38050 303 / 3e-104 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.016G110600 [exp] 79 / 5e-17 AT2G38050 350 / 1e-122 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.005G047800 [exp] 77 / 2e-16 AT2G38050 295 / 8e-101 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.004G163600 [exp] 67 / 1e-12 AT2G16530 418 / 6e-147 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008951 [exp] 248 / 1e-81 AT5G16010 272 / 4e-91 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10028869 [exp] 127 / 2e-36 AT5G16010 123 / 2e-35 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10021127 [exp] 80 / 6e-18 AT2G38050 256 / 3e-87 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10017183 [exp] 74 / 9e-16 AT2G38050 138 / 2e-64 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10028371 [exp] 69 / 2e-13 AT2G16530 336 / 4e-115 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10001695 [exp] 59 / 5e-10 AT3G55360 540 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10042055 [exp] 59 / 9e-10 AT2G16530 347 / 8e-120 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10005162 [exp] 58 / 2e-09 AT3G55360 541 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10041820 [exp] 0 / 1 AT2G16530 289 / 2e-96 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [poplar] [flax] Steroid_dh PF02544 [poplar] [flax] Steroid_dh 3-oxo-5-alpha-steroid 4-dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.010G245200.1 pacid=42799236 polypeptide=Potri.010G245200.1.p locus=Potri.010G245200 ID=Potri.010G245200.1.v4.1 annot-version=v4.1 ATGGCATCCATGTTGTCTAGATTAATTATCTTTCCTACACCACCTTCTATGATCGTTCCAGTCATGTCTGTGGTTAGTCTGGTAGCAATAGCAGGTCTTG GTGTTTCTGAAATCTTAGGAAAGCATTTACAGTACTCAAAATTCTGGAACTTGAATTCTGCAAAATCTTCAAGAAAGCAGATACAACTCTCCAGCAGAAC TGGCATGCTTGTACTTTATGTGCCAGCTTTCCTTTCTGGTGTTGCTTCTTTTGTGCTCTATCCAAATCATGATCTCAGGTTGTTCCTGGTTAAAGCAACC CTTACCATACATTTCTTCAAGAGGGTCATTGAGGTGCTGTGTGTTCACAAATATAGTACTAGTGGGGTGGTTCTTGATTCTGCAATTCTTATAAGTTCAA GTTATTTCTCAGCTACTTCAACCATGATATATGGTCAGTATCTAACACAAGGGTTTCCTGAGCCACAGCTGGACTTGAAGTATCCAGGGATTTTGCTGTT CATGTTGGGAACCTTCGGCAACTTCTACCACCACCAAGTTCTTGCCTCTTTGAGAACAAATGATGACAAAGAATACAAGATTCCAAAGGGTGGTTTATTT GACCTGGTGATCTGCCCTCACTATCTCTTTGAGGTGTTGGGGTTTATAGGGATATTTTTCATTTCTCAAACACTGTATTCCTTTTGCTTCACTTTAGGCA CTATTGTTTACTTGATTGGAAGGAGTTACGCTACTAGGAGATGGTACCTTTCCAAGTTCGAAGATTTTCCCAAGGATGTCAAGGCTCTTATTCCTTTTGT ATTTTGA
AA sequence Show only first row Show all	>Potri.010G245200.1 pacid=42799236 polypeptide=Potri.010G245200.1.p locus=Potri.010G245200 ID=Potri.010G245200.1.v4.1 annot-version=v4.1 MASMLSRLIIFPTPPSMIVPVMSVVSLVAIAGLGVSEILGKHLQYSKFWNLNSAKSSRKQIQLSSRTGMLVLYVPAFLSGVASFVLYPNHDLRLFLVKAT LTIHFFKRVIEVLCVHKYSTSGVVLDSAILISSSYFSATSTMIYGQYLTQGFPEPQLDLKYPGILLFMLGTFGNFYHHQVLASLRTNDDKEYKIPKGGLF DLVICPHYLFEVLGFIGIFFISQTLYSFCFTLGTIVYLIGRSYATRRWYLSKFEDFPKDVKALIPFVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.010G245200 [exp]	0	1
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.006G109600 [exp]	3.46	0.8950	Pt-ATPK19.1
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.006G175500 [exp]	4.24	0.9152	Pt-ATTPS11.1
AT3G27150			Galactose oxidase/kelch repeat...		Potri.001G331500 [exp]	5.29	0.9268
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.011G121200 [exp]	6.92	0.9048
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Potri.013G023200 [exp]	8.12	0.9228
AT1G32350		AOX1D	alternative oxidase 1D (.1)		Potri.003G103900 [exp]	8.48	0.9144
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Potri.018G104900 [exp]	13.63	0.8518	Pt-SKIP1.1
AT2G31945			unknown protein		Potri.009G024300 [exp]	14.38	0.8861
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.014G103000 [exp]	15.19	0.8759	Pt-ATHB.5
AT5G04250			Cysteine proteinases superfami...		Potri.008G036900 [exp]	15.96	0.8921

Compare expression of checked genes

Potri.010G245200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.