Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04890 113 / 2e-28 RTM2 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) AT2G27140 71 / 3e-14 HSP20-like chaperones superfamily protein (.1) AT5G20970 71 / 6e-14 HSP20-like chaperones superfamily protein (.1) AT1G54400 55 / 5e-09 HSP20-like chaperones superfamily protein (.1) AT1G07400 44 / 2e-05 HSP20-like chaperones superfamily protein (.1) AT1G59860 43 / 5e-05 HSP20-like chaperones superfamily protein (.1) AT1G53540 43 / 7e-05 HSP20-like chaperones superfamily protein (.1) AT4G27670 44 / 8e-05 HSP21 heat shock protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G013800 [exp] 376 / 3e-130 AT5G04890 135 / 3e-36 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Potri.008G014000 [exp] 81 / 6e-17 AT3G10680 84 / 1e-17 HSP20-like chaperones superfamily protein (.1) Potri.004G191101 [exp] 77 / 1e-15 AT2G27140 109 / 2e-28 HSP20-like chaperones superfamily protein (.1) Potri.004G191200 [exp] 76 / 2e-15 AT2G27140 106 / 3e-27 HSP20-like chaperones superfamily protein (.1) Potri.009G153100 [exp] 69 / 5e-13 AT2G27140 110 / 5e-29 HSP20-like chaperones superfamily protein (.1) Potri.004G191000 [exp] 66 / 5e-13 AT2G27140 81 / 2e-19 HSP20-like chaperones superfamily protein (.1) Potri.013G054700 [exp] 66 / 7e-13 AT1G54400 93 / 3e-24 HSP20-like chaperones superfamily protein (.1) Potri.019G037700 [exp] 66 / 1e-12 AT1G54400 93 / 5e-24 HSP20-like chaperones superfamily protein (.1) Potri.009G153200 [exp] 66 / 2e-12 AT2G27140 89 / 9e-22 HSP20-like chaperones superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028874 [exp] 108 / 5e-26 AT5G04890 103 / 4e-24 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Lus10008946 [exp] 104 / 4e-25 AT5G04890 102 / 3e-24 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Lus10008426 [exp] 83 / 2e-17 AT2G27140 111 / 7e-29 HSP20-like chaperones superfamily protein (.1) Lus10003356 [exp] 69 / 4e-13 AT2G27140 103 / 3e-26 HSP20-like chaperones superfamily protein (.1) Lus10024258 [exp] 54 / 2e-08 AT5G04890 61 / 2e-11 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Lus10032902 [exp] 50 / 6e-07 AT1G54400 89 / 4e-22 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 44 / 3e-05 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10006444 [exp] 45 / 4e-05 AT4G27670 135 / 1e-39 heat shock protein 21 (.1) Lus10026262 [exp] 44 / 6e-05 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10028577 [exp] 43 / 0.0002 AT1G76770 152 / 3e-44 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [poplar] [flax] HSP20 PF00011 [poplar] [flax] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Potri.010G245500.1 pacid=42797332 polypeptide=Potri.010G245500.1.p locus=Potri.010G245500 ID=Potri.010G245500.1.v4.1 annot-version=v4.1 ATGGCTAATAGGACACGCATTGGGGGATCTGCTACTATCCAGTATGAGGATTTTCAGCCCAAGTATGAATGGAAGGAGGAAGAGGGGGCAAGTGTTCTGC TTATTCATCTTCCTGACTTTCTTAAGGAGCAGTTGAGTATCACTTACGTGTGTTCCTCCCGAGTCGTCCGAGTTACTGGAGAAAAACCACTTGCTTACAA ACGATTCGATCAAACTTTTCCTGCTCCAGAAAATTGTGAGGTGAATAAAATTCAAGGCATGTTCCAGAATGGAATTCTTTTCATTACAATTCCTAAAGCA ACCAACAGACAACCTCACTCTGAAGAAGAAGAAAAGGTGACCAAAGAGGCTTCTCTGCCTTCAAAAGACGCCTTAGCAGAGAAGCCTATGACTTCTCAAG TCTCTCAAAAACCTGCAATGGAGGAAAAGGCTCAGAAGGTTACGGAGAACACTGCAAGCTTTGCTAGCCCTCAAGAAGCCTTGAAAGATCAACAGTCTCA AAAGGGGAACCCACCAAAAGTTGCTTCAACAACTGATACCATGAAGCAGAAAGATGAAAGCAGAAAGATGCCAGCAGAACCAGTTAAGGAGAAGACTTTG TTTGAACAAGAGGAAAGCATAAAAAAAACAACAGAATCTCTGACAACTGAAAGTGATGAAGGCTGCAAGAAAAGGAAAGAATCACTGTTGACTAGTGAAA ATGCTCCCCTTGAAAACTTGGAGAAAGACAAAGAAAAGAGTGCTAAATTTGCTGCTGCTGGTACCGAGGAGAAGTCGAAGCGGGATTTCAATATTGCAGG CAAAGTCAAGGACGTGAAGAATGTAGCAGCAACTGCTGCAAAGAAGACCATGAAAGGACTTGGCACCATGGAGATAAGTGAAGAAAGGCAATCAATGGTG TATATGGGTGTGGCAGTCCTAGCGGTTGTAGCACTTGGAGCTTTCATAGCTTACAGCTATCGATCACCTGGAACTTCCAAAGACTAA
AA sequence Show only first row Show all	>Potri.010G245500.1 pacid=42797332 polypeptide=Potri.010G245500.1.p locus=Potri.010G245500 ID=Potri.010G245500.1.v4.1 annot-version=v4.1 MANRTRIGGSATIQYEDFQPKYEWKEEEGASVLLIHLPDFLKEQLSITYVCSSRVVRVTGEKPLAYKRFDQTFPAPENCEVNKIQGMFQNGILFITIPKA TNRQPHSEEEEKVTKEASLPSKDALAEKPMTSQVSQKPAMEEKAQKVTENTASFASPQEALKDQQSQKGNPPKVASTTDTMKQKDESRKMPAEPVKEKTL FEQEESIKKTTESLTTESDEGCKKRKESLLTSENAPLENLEKDKEKSAKFAAAGTEEKSKRDFNIAGKVKDVKNVAATAAKKTMKGLGTMEISEERQSMV YMGVAVLAVVALGAFIAYSYRSPGTSKD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.010G245500 [exp]	0	1
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.010G245600 [exp]	1.41	0.9687
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Potri.006G253900 [exp]	2.82	0.9583
AT1G75260			oxidoreductases, acting on NAD...		Potri.002G034700 [exp]	3.46	0.9573
AT1G76040		CPK29	calcium-dependent protein kina...		Potri.002G017000 [exp]	4.89	0.9573
AT1G60360			RING/U-box superfamily protein...		Potri.002G085800 [exp]	5.91	0.9110
AT2G41200			unknown protein		Potri.006G038600 [exp]	5.91	0.9445
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G036500 [exp]	9.16	0.9287
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.017G139500 [exp]	9.94	0.9341
AT3G50120			Plant protein of unknown funct...		Potri.003G159300 [exp]	13.03	0.9336
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Potri.005G122700 [exp]	13.22	0.9361

Compare expression of checked genes

Potri.010G245500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.