Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04895 1861 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G48650 1380 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G01130 1327 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT2G35920 905 / 0 RNA helicase family protein (.1) AT1G58060 552 / 2e-174 RNA helicase family protein (.1) AT1G58050 514 / 2e-160 RNA helicase family protein (.1) AT2G30800 304 / 1e-85 ATVT-1, HVT1 helicase in vascular tissue and tapetum (.1) AT1G06670 300 / 9e-84 NIH nuclear DEIH-boxhelicase (.1) AT1G26370 252 / 5e-71 RID1 RNA helicase family protein (.1) AT1G32490 211 / 1e-55 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G014100 [exp] 2102 / 0 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G117800 [exp] 1391 / 0 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G042500 [exp] 1390 / 0 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.016G068900 [exp] 904 / 0 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.004G222900 [exp] 557 / 2e-176 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.010G172500 [exp] 327 / 1e-93 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.005G206500 [exp] 315 / 1e-89 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1) Potri.008G096800 [exp] 272 / 6e-78 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 211 / 5e-57 AT3G62310 1252 / 0.0 RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034126 [exp] 1902 / 0 AT5G04895 1904 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043459 [exp] 1896 / 0 AT5G04895 1897 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10013479 [exp] 1350 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10007938 [exp] 1348 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009012 [exp] 1333 / 0 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10009643 [exp] 1225 / 0 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10009022 [exp] 846 / 0 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10009660 [exp] 643 / 0 AT2G35920 969 / 0.0 RNA helicase family protein (.1) Lus10001415 [exp] 331 / 6e-96 AT2G30800 1276 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10029806 [exp] 318 / 5e-91 AT2G30800 1250 / 0.0 helicase in vascular tissue and tapetum (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [poplar] [flax] DSRM PF00035 [poplar] [flax] dsrm Double-stranded RNA binding motif CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF04408 [poplar] [flax] HA2 Helicase associated domain (HA2) CL0021 [poplar] [flax] OB PF07717 [poplar] [flax] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold
Representative CDS sequence Show only first row Show all	>Potri.010G246000.1 pacid=42797855 polypeptide=Potri.010G246000.1.p locus=Potri.010G246000 ID=Potri.010G246000.1.v4.1 annot-version=v4.1 ATGCAAAATTCAAAGCTAATGCTAAGAAGTTTCCTTCTGGGATCTTGCTGCACCTCCACCAAGAAGAAGTCAGTTTCCAATACCATCTTCAGCAATAAAA AAAACAACCATTTATTTGGTTTGCCTTTGTTTCTCCTGAATTCTAATGAAACCAGCTTTTTAGTCGCCAAAAGGCGTGGTTTTTGCGGGTATGCAGTAGA GCAGTTCTCTGATGATGAGTATGAGTGTGATTTTGAAAGCCACAAGGCTTCTTCGTCGGTGGCCAATGTTGATGAATGGAAATGGAAACTCAGTTTGCTA TTGCGTAGTGAAACAGACCAAGAGATTGTTTCTAAAGATAGAAAAGACAGGAGGGACTATGAGCAGATATCAAATCTTACTAGAAGAATGGGACTTTATA GTGAACTGTATGGAAAAGTGGTGGTTGCAAGCAAGGTTCCTCTACCTAACTACAGGTCTGATTTGGATGATAAGCGGCCACAAAGGGAGGTGGTTATCCC ACTAAGTTTGCAAAGGAGGGTTGAGGGTTTACTTCAGGAGCATCTTGATAGAGCTCAATTAAAGGCTGAAAATGTTGGTGGTAGTGCAGATGATGCCAAG TCCATCAATCAGACTGGAGATATAAGTTTAGATGAGAATAAGGATTCTTTCCTAGACCGTTCTGTGATGGAAAGGGTTCTTCAGAGGAGGAGTTTGCGGA TGCGTAACATGCAAAGAGCTTGGCAGGAATCACCTGAGGGCAGAAAAATGATGGACTTCAGGAAATCTCTACCGGCTTTCAAGGAAAAGGAGAGGTTACT CCAAGCAATAGCAAAGAATCAGGTCATAGTAATATCTGGAGAGACTGGATGTGGTAAAACCACTCAACTCCCTCAATATATTCTGGAGTCGGAAATAGAA TCTGGGCGTGGAGCATTCTGTAGCATAATTTGCACTCAGCCTCGAAGAATATCTGCTATGTCTGTTGCAGATAGAGTGTCTGCAGAGAGAGGAGAGCCTC TTGGTGAAGCAGTTGGTTATAAAGTTCGACTAGAGGGTGTGAAAGGAAAAAACACCCATCTGCTTTTTTGTACCAGTGGAATTTTACTCCGACGCCTGTT AAGTGACCACAACTTGAACGGCATAACCCATGTTTTTGTTGATGAAATTCATGAGCGAGGCATGAATGAAGACTTCCTATTGATTGTGCTCAAGGATCTT CTTCCACGTCGTCAAGACTTGAGATTGATTTTAATGAGTGCTACTTTGAATGCGGAACTCTTTTCCAATTATTTTGGAGGAGCACCTGCTATTCATATTC CGGGCTTTACATATCCAGTGAGGACACAATTTTTAGAAGATGTACTAGAAATGACTGGATATAAGTTGACTTCTTTCAATCAAATTGATGATTATGGCCA AGAGAAAATGTGGAAAACACAGAGGCAGCTGGTACCGCGGAAAAGGAAAAACCAGATCACCACTCTTGTTGAGGATGCTCTTAATAAATCAAGTTTTGAG AATTATAGTTCCAGAGCACGTGACTCTCTGGCATGCTGGATGCCTGATTGCATAGGATTTAACCTTATTGAAGCAGTTTTGTGCCATATATGTCGGAAGG AAAGACCAGGTGCTGTCTTAGTGTTCATGACTGGTTGGGAGGATATTAGCTCTTTGAGGGATCAACTTAAAGCTCATCCTCTTCTTGGTGATCCTAACAG AGTTCTGCTTGTAACTTGCCATGGTTCTATGGCAACCTCTGAACAGAAACTGATATTTGAGAAACCTCCTCCTAATGTACGTAAAATAGTTCTTGCAACA AACATGGCAGAGGCAAGTATTACAATCAATGATATAGTTTTTGTTGTGGATTGTGGGAAAGCAAAAGAGACCACTTACGATGCTTTAAACAATACGCCCT GCCTGCTACCTTCTTGGATATCAAAAGCATCTGCACGACAAAGAAAGGGTAGGGCTGGCCGAGTGCAGCCAGGCGAATGTTACCACCTATACCCGAGATG TGTATATGAAGCTTTTGCTGAATATCAACTTCCTGAACTTTTGAGGACTCCCCTGAACTCTCTTTGCTTGCAAATAAAGAGTTTGCAGGTTGGAAGCATA GGGGAATTCTTGTCAGCTGCTCTCCAGCCACCAGAATCATTGGCTGTTCAAAATGCCATTGGTTTTCTGAAGATGATTGGAGCATTGGATGAGAAGGAGA ATCTGACAAATCTTGGGAAGTATTTGACAATGCTTCCAGTAGATCCCAAGCTGGGTAAAATGTTAATAATGGGTGCTATCTTTCATTGCTTTGATCCTGT GTTAACAATAGTGTCCGGGCTCAGTGTCAGGGATCCTTTCCTTCTGCCGCAGGACAAAAAGGATTTAGCTGGGACAGCAAAATCTAGATTTTCTGCAAAA GACTACAGTGATCATATGGCTCTTGTCCGTGCATATGAAGGATGGAAAGAAGCTGAAAGAGAAGGGTCAGCATATGAGTATTGCTGGAGAAATTTCCTAT CTGCACAAACTTTGCAGGCCATCCATTCTCTGAGGAAGCAGTTTAACTTCATTTTAAAAGATACCGGCTTGGTAGAAGAAGATGCAAGCAACAACAACAA ATTAAGTCACAACCAATCATTGGTTCGTGCAATTATATGCTCTGGCCTCTATCCTGGAATTGCATCAGTGGTGCATAGAGAAACATCCATGTCTTTCAAA ACAATGGACGATGGCCAAGTTTTTCTATATGCTAATTCTGTGAATGCACGTTATGAAACAATTCCTTATCCATGGCTGGTCTTTGGTGAAAAAGTAAAGG TCAACACAGTTTTCATACGTGATTCCACTGGTGTATCTGATTCAATACTGATCCTTTTTGGTGGTGCCCTTGCTTGTGGGGTACAGGCTGGACATCTGAA AATGTTGGATGGATATATTGATTTCTTCATGGATCATAATTTGGCAGAGTGCTTCTTGAAGCTTAAAGAAGAACTTGATAAGCTCCTTCAGAAGAAGCTT CAAGATCCTAACCTTGACATACTCAAGGAAGGAAAATACCTCATGCTTGCTGTTCAAGAGCTGGTATCAGGAGATCAATGTGAAGGAAGATTTGTATTTG GTCGCGAAAGCAGGAAGCCTAAGATAATTAATGATAATGACAGATTTACAGAAGATGGAGCAAATCCGAAAAGTTTGCTACAAACACTACTGATGAGATC TGGACACTCCCCCCCAAAATACAAGACAAAGCACCTTAAGACAAATGAGTTTAGGGCACTGGTCGAATTCAAGGGAATGCAGTTTGTTGGGAAACCCAAG AGAAACAAGCAACTAGCAGAGGGGGATGCTGCTATTGAGGCACTGGCCTGGTTAACTCACACTTCCAACAACAATCAAAACGAGCATGACGATTCCCAAC CTGATGTCACTGACAACATGCTGAAAGTTCTCGGAAAACGTCGTAGATCAAAGCGTCACTCTGGTTGA
AA sequence Show only first row Show all	>Potri.010G246000.1 pacid=42797855 polypeptide=Potri.010G246000.1.p locus=Potri.010G246000 ID=Potri.010G246000.1.v4.1 annot-version=v4.1 MQNSKLMLRSFLLGSCCTSTKKKSVSNTIFSNKKNNHLFGLPLFLLNSNETSFLVAKRRGFCGYAVEQFSDDEYECDFESHKASSSVANVDEWKWKLSLL LRSETDQEIVSKDRKDRRDYEQISNLTRRMGLYSELYGKVVVASKVPLPNYRSDLDDKRPQREVVIPLSLQRRVEGLLQEHLDRAQLKAENVGGSADDAK SINQTGDISLDENKDSFLDRSVMERVLQRRSLRMRNMQRAWQESPEGRKMMDFRKSLPAFKEKERLLQAIAKNQVIVISGETGCGKTTQLPQYILESEIE SGRGAFCSIICTQPRRISAMSVADRVSAERGEPLGEAVGYKVRLEGVKGKNTHLLFCTSGILLRRLLSDHNLNGITHVFVDEIHERGMNEDFLLIVLKDL LPRRQDLRLILMSATLNAELFSNYFGGAPAIHIPGFTYPVRTQFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQRQLVPRKRKNQITTLVEDALNKSSFE NYSSRARDSLACWMPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISSLRDQLKAHPLLGDPNRVLLVTCHGSMATSEQKLIFEKPPPNVRKIVLAT NMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRKGRAGRVQPGECYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSI GEFLSAALQPPESLAVQNAIGFLKMIGALDEKENLTNLGKYLTMLPVDPKLGKMLIMGAIFHCFDPVLTIVSGLSVRDPFLLPQDKKDLAGTAKSRFSAK DYSDHMALVRAYEGWKEAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFNFILKDTGLVEEDASNNNKLSHNQSLVRAIICSGLYPGIASVVHRETSMSFK TMDDGQVFLYANSVNARYETIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGALACGVQAGHLKMLDGYIDFFMDHNLAECFLKLKEELDKLLQKKL QDPNLDILKEGKYLMLAVQELVSGDQCEGRFVFGRESRKPKIINDNDRFTEDGANPKSLLQTLLMRSGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPK RNKQLAEGDAAIEALAWLTHTSNNNQNEHDDSQPDVTDNMLKVLGKRRRSKRHSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.010G246000 [exp]	0	1
AT5G19420			Regulator of chromosome conden...		Potri.003G197600 [exp]	1.00	0.8244
					Potri.003G157401 [exp]	1.73	0.7840
AT2G17580			Polynucleotide adenylyltransfe...		Potri.005G100100 [exp]	2.82	0.7798
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Potri.014G160300 [exp]	3.16	0.7718
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Potri.002G221300 [exp]	3.74	0.7967
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Potri.007G033000 [exp]	8.12	0.7644
AT1G09800			Pseudouridine synthase family ...		Potri.003G008500 [exp]	8.77	0.7522
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.001G107300 [exp]	8.94	0.7124
AT2G19490			recA DNA recombination family ...		Potri.018G067900 [exp]	10.39	0.6995
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Potri.002G054000 [exp]	12.72	0.6727	Pt-UVH6.1

Compare expression of checked genes

Potri.010G246000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.